D. Crook

Control of Artifactual Variation in Reported Intersample Relatedness during Clinical Use of a Mycobacterium tuberculosis Sequencing Pipeline

A. Walker, T. Peto, D. Crook, 2018, Journal of Clinical Microbiology.

Mycobacterial DNA Extraction for Whole-Genome Sequencing from Early Positive Liquid (MGIT) Cultures

T. Walker, T. Peto, D. Crook, 2015, Journal of Clinical Microbiology.

Evaluation of methods for detecting human reads in microbial sequencing datasets

Stephen J Bush, Thomas R Connor, Tim E A Peto, 2020, Microbial genomics.

Phenotypically distinct human sequence is widespread in publicly archived microbial reads: an evaluation of methods for its detection

T. Peto, D. Crook, T. Connor, 2019, bioRxiv.

MinION Nanopore Sequencing of Multiple Displacement Amplified Mycobacteria DNA Direct from Sputum

T. Peto, D. Crook, L. Pankhurst, 2018, bioRxiv.

Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis

Phelim Bradley, Gil McVean, Zamin Iqbal, 2015, Nature Communications.

Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study

Thomas R Rogers, Sarah Wordsworth, Stefan Niemann, 2016, The Lancet. Respiratory medicine.

Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

M. Schatz, Z. Iqbal, S. Kouchaki, 2021, bioRxiv.