Igor Ulitsky

发表

Detecting Disease-Specific Dysregulated Pathways Via Analysis of Clinical Expression Profiles

Richard M. Karp, Ron Shamir, Igor Ulitsky, 2008, RECOMB.

Identifying functional modules using expression profiles and confidence-scored protein interactions

Ron Shamir, Igor Ulitsky, R. Shamir, 2009, Bioinform..

The Average Common Substring Approach to Phylogenomic Reconstruction

David Burstein, Tamir Tuller, Benny Chor, 2006, J. Comput. Biol..

Identification of functional modules using network topology and high-throughput data

Ron Shamir, Igor Ulitsky, R. Shamir, 2007, BMC Systems Biology.

Information Theoretic Approaches to Whole Genome Phylogenies

David Burstein, Tamir Tuller, Benny Chor, 2005, RECOMB.

Discovering Transcriptional Modules by Combined Analysis of Expression Profiles and Regulatory Sequences

Ron Shamir, Chaim Linhart, Igor Ulitsky, 2010, RECOMB.

The EXPANDER Integrated Platform for Transcriptome Analysis.

Roded Sharan, Ron Shamir, Ran Elkon, 2019, Journal of molecular biology.

SPIKE: a database of highly curated human signaling pathways

Ron Shamir, Ran Elkon, Eyal David, 2010, Nucleic Acids Res..

SPIKE – a database, visualization and analysis tool of cellular signaling pathways

Ron Shamir, Ran Elkon, Jackie Assa, 2008, BMC Bioinformatics.

MetaReg: a platform for modeling, analysis and visualization of biological systems using large-scale experimental data

Ron Shamir, Irit Gat-Viks, Igor Ulitsky, 2008, Genome Biology.

Integration of Transcriptomics, Proteomics, and MicroRNA Analyses Reveals Novel MicroRNA Regulation of Targets in the Mammalian Inner Ear

Ron Shamir, Ran Elkon, Amiel A. Dror, 2011, PloS one.

Predicting microRNA targeting efficacy in Drosophila

Vikram Agarwal, David P. Bartel, Igor Ulitsky, 2017, Genome Biology.

Detecting pathways transcriptionally correlated with clinical parameters.

Ron Shamir, Igor Ulitsky, R. Shamir, 2008, Computational systems bioinformatics. Computational Systems Bioinformatics Conference.

Predictive models of subcellular localization of long RNAs

Igor Ulitsky, I. Ulitsky, Binyamin Zuckerman, 2019, RNA.

DEGAS: De Novo Discovery of Dysregulated Pathways in Human Diseases

Richard M. Karp, Ron Shamir, Igor Ulitsky, 2010, PloS one.

Evolution to the rescue: using comparative genomics to understand long non-coding RNAs

Igor Ulitsky, I. Ulitsky, 2016, Nature Reviews Genetics.

Beyond Secondary Structure: Primary-Sequence Determinants License Pri-miRNA Hairpins for Processing

David P. Bartel, Igor Ulitsky, D. Bartel, 2013, Cell.

Different sets of QTLs influence fitness variation in yeast

Ron Shamir, Martin Kupiec, Ofer Lavi, 2010, Molecular systems biology.

Allegro: Analyzing expression and sequence in concert to discover regulatory programs

Ron Shamir, Chaim Linhart, Igor Ulitsky, 2009, Nucleic acids research.

Comprehensive MicroRNA Profiling Reveals a Unique Human Embryonic Stem Cell Signature Dominated by a Single Seed Sequence

Ron Shamir, Jing Chen, Igor Ulitsky, 2008, Stem cells.

Functional annotation of human long noncoding RNAs via molecular phenotyping.

Boris Lenhard, Lusy Handoko, Piero Carninci, 2020, Genome research.

A plasma-membrane E-MAP reveals links of the eisosome with sphingolipid metabolism and endosomal trafficking

Ron Shamir, Nevan J Krogan, Matthias Mann, 2010, Nature Structural &Molecular Biology.

Circular RNAs are long-lived and display only minimal early alterations in response to a growth factor

Igor Ulitsky, Yehoshua Enuka, Yosef Yarden, 2015, Nucleic acids research.

Methods for distinguishing between protein-coding and long noncoding RNAs and the elusive biological purpose of translation of long noncoding RNAs

Igor Ulitsky, I. Ulitsky, Gali Housman, 2015, bioRxiv.