Patrick B. F. O'Connor

发表

rRNA:mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments

Jonathan S. Weissman, John F. Atkins, Pavel V. Baranov, 2013, Bioinform..

GWIPS-viz: development of a ribo-seq genome browser

Desmond G. Higgins, Audrey M. Michel, James P. A. Mullan, 2013, Nucleic Acids Res..

Trips-Viz: a transcriptome browser for exploring Ribo-Seq data

Audrey M. Michel, Pavel V. Baranov, Patrick B. F. O'Connor, 2018, Nucleic Acids Res..

GWIPS-viz: 2018 update

Audrey M. Michel, James P. A. Mullan, Pavel V. Baranov, 2017, Nucleic Acids Res..

Surveying the relative impact of mRNA features on local ribosome profiling read density in 28 datasets

Pavel V. Baranov, Patrick B. F. O'Connor, Dmitry E. Andreev, 2015 .

Insights into the mechanisms of eukaryotic translation gained with ribosome profiling

Patrick B. F. O'Connor, P. Baranov, D. Andreev, 2016, Nucleic acids research.

RiboGalaxy: A browser based platform for the alignment, analysis and visualization of ribosome profiling data

Audrey M. Michel, Claire A. Donohue, Patrick B. F. O'Connor, 2016, RNA biology.

Translation of 5′ leaders is pervasive in genes resistant to eIF2 repression

Patrick B. F. O'Connor, D. Morris, E. Kenny, 2015, eLife.

Comparative survey of the relative impact of mRNA features on local ribosome profiling read density

Pavel V. Baranov, Patrick B. F. O'Connor, Dmitry E. Andreev, 2015, Nature Communications.

Evaluating data integrity in ribosome footprinting datasets through modelled polysome profiles

Patrick B. F. O'Connor, P. Baranov, O. Sansom, 2022, Nucleic acids research.

Transcriptional and translational profiling in yeast reveals the use of diverse genome decoding mechanisms to generate functionally distinct proteoforms

Audrey M. Michel, Patrick B. F. O'Connor, Stephen J. Kiniry, 2022, bioRxiv.

AMD1 mRNA employs ribosome stalling as a mechanism for molecular memory formation

Audrey M. Michel, Patrick B. F. O'Connor, Stephen J. Kiniry, 2018, Nature.

The effect of heterogeneous Transcription Start Sites (TSS) on the translatome: implications for the mammalian cellular phenotype

Patrick B. F. O'Connor, S. Antonarakis, S. Nikolaev, 2015, BMC Genomics.

Oxygen and glucose deprivation induces widespread alterations in mRNA translation within 20 minutes

Patrick B. F. O'Connor, Alexander V. Zhdanov, P. Baranov, 2015, Genome Biology.

Translation initiation downstream from annotated start codons in human mRNAs coevolves with the Kozak context

Patrick B. F. O'Connor, Alexander V. Zhdanov, P. Baranov, 2020, Genome research.

Polysomes Bypass a 50-Nucleotide Coding Gap Less Efficiently Than Monosomes Due to Attenuation of a 5′ mRNA Stem–Loop and Enhanced Drop-off

Patrick B. F. O'Connor, J. Weissman, J. Puglisi, 2020, Journal of Molecular Biology.

Polysomes Bypa Coding Gap Les Monosomes Due a 5′ mRNA Stem Enhanced Drop-

Patrick B. F. O'Connor, J. Weissman, J. Puglisi, 2022 .

Integrated data-driven reannotation of the Kluyveromyces marxianus genome reveals an expanded protein coding repertoire

Audrey M. Michel, Patrick B. F. O'Connor, Stephen J. Kiniry, 2022 .

In Vivo RNAi-Mediated eIF3m Knockdown Affects Ribosome Biogenesis and Transcription but Has Limited Impact on mRNA-Specific Translation

Patrick B. F. O'Connor, Daniel G. Anderson, R. Langer, 2019, Molecular therapy. Nucleic acids.

Rocaglates Induce Gain-of-Function Alterations to eIF4A and eIF4F

Patrick B. F. O'Connor, R. Cencic, J. Pelletier, 2020, Cell reports.

Itm2a silencing rescues lamin A mediated inhibition of 3T3-L1 adipocyte differentiation

Patrick B. F. O'Connor, E. Kenny, P. Baranov, 2017, Adipocyte.

Unusually efficient CUG initiation of an overlapping reading frame in POLG mRNA yields novel protein POLGARF

Audrey M. Michel, Patrick B. F. O'Connor, Stephen J. Kiniry, 2020, Proceedings of the National Academy of Sciences.

In Vivo RNAi-Mediated eIF3m Knockdown Affects Ribosome Biogenesis and Transcription but Has Limited Impact on mRNA-Specific Translation

Patrick B. F. O'Connor, Daniel G. Anderson, Kevin J. Kauffman, 2019, Molecular therapy. Nucleic acids.

Unprecedentedly efficient CUG initiation of an overlapping reading frame in POLG mRNA yields novel protein POLGARF

Audrey M. Michel, Patrick B. F. O'Connor, Stephen J. Kiniry, 2020, bioRxiv.

Streptomyces rare codon UUA: from features associated with 2 adpA related locations to candidate phage regulatory translational bypassing

Patrick B. F. O'Connor, P. Baranov, Sinéad O’Loughlin, 2023, RNA biology.

GWIPS-viz: development of a ribo-seq genome browser

Audrey M. Michel, Claire A. Donohue, Patrick B. F. O'Connor, 2013, Nucleic Acids Res..

Ribosome profiling reveals downregulation of UMP biosynthesis as the major early response to phage infection

Patrick B. F. O'Connor, P. Baranov, Martina M Yordanova, 2024, Microbiology spectrum.