Benjamin J. Ainscough

发表

CIViC: A knowledgebase for expert-crowdsourcing the clinical interpretation of variants in cancer

Obi L. Griffith, Steven J. M. Jones, Benjamin M. Good, 2016, bioRxiv.

Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples

Obi L. Griffith, Malachi Griffith, Nicholas C. Spies, 2018, Genetics in Medicine.

MyGene.info and MyVariant.info: Gene and Variant Annotation Query Services

Obi L. Griffith, Chunlei Wu, Andrew I. Su, 2015 .

Standard operating procedure for somatic variant refinement of tumor sequencing data

Malachi Griffith, Obi L. Griffith, Sanjay Joshua Swamidass, 2018, bioRxiv.

Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud

Obi L. Griffith, Malachi Griffith, Nicholas C. Spies, 2015, PLoS Comput. Biol..

DGIdb 2.0: mining clinically relevant drug–gene interactions

Deng Pan, Obi L. Griffith, Malachi Griffith, 2015, Nucleic Acids Res..

Abstract 3289: Implementing evolving clinical standards in a variant interpretation knowledgebase

Obi L. Griffith, Malachi Griffith, Kilannin Krysiak, 2018, Bioinformatics and Systems Biology.

Genome Modeling System: A Knowledge Management Platform for Genomics

Obi L. Griffith, Ken Chen, Vincent J. Magrini, 2015, PLoS Comput. Biol..

CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer

Steven J. M. Jones, Benjamin M. Good, Joshua F. McMichael, 2017, Nature Genetics.

Organizing knowledge to enable personalization of medicine in cancer

Benjamin M. Good, Joshua F. McMichael, Benjamin J. Ainscough, 2014, Genome Biology.

DoCM: a database of curated mutations in cancer

Joshua F. McMichael, Benjamin J. Ainscough, Alex H. Wagner, 2016, Nature Methods.

The prognostic effects of somatic mutations in ER-positive breast cancer

Benjamin J. Ainscough, Katie M. Campbell, Christopher A. Miller, 2017, Nature Communications.

The prognostic effects of somatic mutations in ER-positive breast cancer

Benjamin J. Ainscough, Katie M. Campbell, Christopher A. Miller, 2017, bioRxiv.

Knowledge Driven Approaches and Machine Learning Improve the Identification of Clinically Relevant Somatic Mutations in Cancer Genomics

Benjamin J. Ainscough, Benjamin John Ainscough, 2017 .

A deep learning approach to automate refinement of somatic variant calling from cancer sequencing data

S Joshua Swamidass, Malachi Griffith, Benjamin J. Ainscough, 2018, Nature Genetics.

Convergent loss of PTEN leads to clinical resistance to a PI3Kα inhibitor

Obi L. Griffith, Malachi Griffith, Benjamin J. Ainscough, 2014, Nature.

High-performance web services for querying gene and variant annotation

Obi L. Griffith, Andrew I. Su, Sean D. Mooney, 2016, Genome Biology.

Genome-Wide Association Study of CSF Levels of 59 Alzheimer's Disease Candidate Proteins: Significant Associations with Proteins Involved in Amyloid Processing and Inflammation

Perry G. Ridge, Benjamin J. Ainscough, Oscar Harari, 2014, PLoS genetics.

A community approach to the cancer-variant-interpretation bottleneck

Joshua F. McMichael, Benjamin J. Ainscough, Alex H. Wagner, 2022, Nature Cancer.

Comprehensive genomic analysis reveals FLT3 activation and a therapeutic strategy for a patient with relapsed adult B-lymphoblastic leukemia.

Benjamin J. Ainscough, Katie M. Campbell, James M. Eldred, 2016, Experimental hematology.

CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase

Joshua F. McMichael, Benjamin J. Ainscough, Erica K. Barnell, 2022, Nucleic Acids Res..

Abstract LB-327: Loss of PTEN leads to clinical resistance to the PI3Kα inhibitor BYL719 and provides evidence of convergent evolution under selective therapeutic pressure

Benjamin J. Ainscough, E. Mardis, O. Griffith, 2014 .

Phosphorylated Tau-Aβ42 Ratio as a Continuous Trait for Biomarker Discovery for Early-Stage Alzheimer’s Disease in Multiplex Immunoassay Panels of Cerebrospinal Fluid

Benjamin J. Ainscough, Alzheimer's Disease Neuroimaging Initiative, Carlos Cruchaga, 2014, Biological Psychiatry.

Evolution of the open-access CIViC knowledgebase is driven by the needs of the cancer variant interpretation community

Steven J. M. Jones, Joshua F. McMichael, Benjamin J. Ainscough, 2021, bioRxiv.

Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples

Benjamin J. Ainscough, Erica K. Barnell, Katie M. Campbell, 2018, Genetics in Medicine.

Molecular phylogenetics of the burrowing crayfish genus Fallicambarus (Decapoda: Cambaridae)

Benjamin J. Ainscough, K. Crandall, H. Robison, 2013 .

Ptau-Aβ42 ratio as a continuous trait for biomarker discovery for early stage Alzheimer’s disease in multiplex immunoassay panels of Cerebrospinal fluid

Benjamin J. Ainscough, A. Fagan, J. Morris, 2014 .

A deep learning approach to automate refinement of somatic variant calling from cancer sequencing data

Benjamin J. Ainscough, Erica K. Barnell, Katie M. Campbell, 2018, Nature Genetics.

High-performance web services for querying gene and variant annotation

Benjamin J. Ainscough, Gregory S. Stupp, A. Su, 2016, Genome Biology.