Jonathan P. Bollback

发表

SIMMAP: Stochastic character mapping of discrete traits on phylogenies

Jonathan P. Bollback, J. Bollback, 2006, BMC Bioinformatics.

Evolutionary Genomics of Staphylococcus aureus Reveals Insights into the Origin and Molecular Basis of Ruminant Host Adaptation

Jason Hinds, Andrew Rambaut, Katherine A. Gould, 2010, Genome biology and evolution.

Reverend Bayes meets Darwin : Bayesian inference of phylogeny and its impact on evolutionary biology ( Supplemental Material )

John P. Huelsenbeck, Fredrik Ronquist, Jonathan P. Bollback, 2001 .

Posterior Mapping and Posterior Predictive Distributions

Jonathan P. Bollback, J. Bollback, 2005 .

Phylogeny, Genome Evolution, and Host Specificity of Single-Stranded RNA Bacteriophage (Family Leviviridae)

John P. Huelsenbeck, Jonathan P. Bollback, J. Huelsenbeck, 2001, Journal of Molecular Evolution.

Application of the Likelihood Function in Phylogenetic Analysis

John P. Huelsenbeck, Jonathan P. Bollback, J. Huelsenbeck, 2004 .

Bayesian Inference of Phylogeny and Its Impact on Evolutionary Biology

Jonathan P. Bollback, J. Huelsenbeck, F. Ronquist, 2001, Science.

Parallel Genetic Evolution Within and Between Bacteriophage Species of Varying Degrees of Divergence

Jonathan P. Bollback, J. Huelsenbeck, J. Bollback, 2009, Genetics.

Clonal interference is alleviated by high mutation rates in large populations.

Jonathan P. Bollback, J. Huelsenbeck, J. Bollback, 2007, Molecular biology and evolution.

Population structure of the malaria vector Anopheles darlingi in a malaria-endemic region of eastern Amazonian Brazil.

Jonathan P. Bollback, J. Vineis, J. Bollback, 2006, The American journal of tropical medicine and hygiene.

Evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family

Jonathan P. Bollback, H. P. de Vladar, J. Bollback, 2015, Journal of The Royal Society Interface.

Genes under positive selection in Escherichia coli.

Matthew W. Dimmic, Jonathan P. Bollback, J. Bollback, 2007, Genome research.

Bayesian model adequacy and choice in phylogenetics.

Jonathan P. Bollback, J. Bollback, 2002, Molecular biology and evolution.

Exploring genomic dark matter: a critical assessment of the performance of homology search methods on noncoding RNA.

Jonathan P. Bollback, J. Bollback, Eva Freyhult, 2006, Genome research.

performance of homology search methods on noncoding RNA Exploring genomic dark matter: A critical assessment of the

Jonathan P. Bollback, J. Bollback, Eva Freyhult, 2010 .

Empirical and hierarchical Bayesian estimation of ancestral states.

Jonathan P. Bollback, J. Huelsenbeck, J. Bollback, 2001, Systematic biology.

Predicting bacterial promoter function and evolution from random sequences

Jonathan P. Bollback, G. Tkačik, J. Bollback, 2022, eLife.

Structure and Evolution of Constitutive Bacterial Promoters

Jonathan P. Bollback, G. Tkačik, J. Bollback, 2020, bioRxiv.

Evolutionary barriers to horizontal gene transfer in macrophage-associated Salmonella

Jonathan P. Bollback, Cecil M. Lewis, K. Sankaranarayanan, 2022, bioRxiv.

BEHAVIORAL PATERNITY PREDICTS GENETIC PATERNITY IN SATIN BOWERBIRDS (PTILONORHYNCHUS VIOLACEUS), A SPECIES WITH A NON-RESOURCE-BASED MATING SYSTEM

Jonathan P. Bollback, M. Braun, G. Patricelli, 2007 .

Evolutionary potential of transcription factors for gene regulatory rewiring

Jonathan P. Bollback, G. Tkačik, C. Guet, 2018, Nature Ecology & Evolution.

Escherichia coli Genes under positive selection in Material Supplemental

Matthew W. Dimmic, Jonathan P. Bollback, J. Bollback, 2007 .

The Use of Coded PCR Primers Enables High-Throughput Sequencing of Multiple Homolog Amplification Products by 454 Parallel Sequencing

Jonathan P. Bollback, R. Nielsen, J. Bollback, 2007, PloS one.

Gene amplification as a form of population-level gene expression regulation

Jonathan P. Bollback, G. Tkačik, J. Bollback, 2020, Nature Ecology & Evolution.

Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza

Jonathan P. Bollback, A. Leigh Brown, J. Bollback, 2013, BMC Evolutionary Biology.

Fitness effects of beneficial mutations: the mutational landscape model in experimental evolution.

Jonathan P. Bollback, J. Bollback, A. Betancourt, 2006, Current opinion in genetics & development.

CRISPR-based herd immunity can limit phage epidemics in bacterial populations

Jonathan P. Bollback, N. Barton, J. Bollback, 2018, eLife.

Environment and the Evolutionary Trajectory of Horizontal Gene Transfer

Jonathan P. Bollback, J. Bollback, R. Bhatia, 2022, Access Microbiology.

Transcriptomic profiling of Escherichia coli K-12 in response to a compendium of stressors

Jonathan P. Bollback, J. Bollback, A. Predeus, 2022, Scientific Reports.

Experimental determination of evolutionary barriers to horizontal gene transfer

Jonathan P. Bollback, J. Bollback, M. Lagator, 2019, bioRxiv.

Estimating the history of mutations on a phylogeny

Jonathan P. Bollback, R. Nielsen, J. Bollback, 2007 .

Estimation of 2Nes From Temporal Allele Frequency Data

Jonathan P. Bollback, Thomas L York, R. Nielsen, 2008, Genetics.

Stochastic mapping of morphological characters.

Jonathan P. Bollback, J. Huelsenbeck, R. Nielsen, 2003, Systematic biology.

Society of Systematic Biologists Stochastic Mapping of Morphological Characters

Jonathan P. Bollback, J. Huelsenbeck, R. Nielsen, 2003 .

Inferring the root of a phylogenetic tree.

Jonathan P. Bollback, J. Huelsenbeck, J. Bollback, 2002, Systematic biology.

Motif depletion in bacteriophages infecting hosts with CRISPR systems

Jonathan P. Bollback, A. Kupczok, Anne Kupczok, 2014, BMC Genomics.

On the mechanistic nature of epistasis in a canonical cis-regulatory element

Călin C Guet, Tiago Paixão, Jonathan P. Bollback, 2017, eLife.

Probabilistic models for CRISPR spacer content evolution

Jonathan P. Bollback, J. Bollback, A. Kupczok, 2013, BMC Evolutionary Biology.

The Role of the Environment in Horizontal Gene Transfer

Jonathan P. Bollback, J. Bollback, M. Lagator, 2022, Molecular biology and evolution.

True and false gharials: a nuclear gene phylogeny of crocodylia.

Jonathan P. Bollback, M. Braun, T. Parsons, 2003, Systematic biology.

Epistatic Interactions in the Arabinose Cis-Regulatory Element

Jonathan P. Bollback, J. Bollback, C. Guet, 2015, Molecular biology and evolution.

On the Mechanistic Nature of Epistasis in a Canonical 1 cis-Regulatory Element 2 3

Jonathan P. Bollback, N. Barton, J. Bollback, 2017 .

Evolutionary interplay between structure, energy and epistasis in the coat protein of the $\phi \chi 174$ phage family

Jonathan P. Bollback, H. P. D. Vladar, J. Bollback, 2015 .

Edinburgh Research Explorer Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza

Jonathan P. Bollback, Samantha J. Lycett, A. J. L. Brown, 2022 .

Regulatory network structure determines patterns of intermolecular epistasis

Jonathan P. Bollback, J. Bollback, C. Guet, 2017, eLife.

Isolation of polymorphic microsatellite markers from the malaria vector Anopheles darlingi

Jonathan P. Bollback, J. Bollback, R. Wilkerson, 2001 .

Evolutionary Genomics of Staphylococcus aureus Reveals Insights into the Origin and Molecular Basis of Ruminant Host Adaptation

Jonathan P. Bollback, A. Witney, K. Gould, 2010, Genome biology and evolution.