Martin Raden

发表

Distinct SARS-CoV-2 RNA fragments activate Toll-like receptors 7 and 8 and induce cytokine release from human macrophages and microglia

R. Backofen, H. Kettenmann, T. Wallach, 2023, Frontiers in Immunology.

Bioconda: sustainable and comprehensive software distribution for the life sciences

Brent S. Pedersen, James E. Johnson, Alexander S. Rose, 2018, Nature Methods.

CheRRI—Accurate classification of the biological relevance of putative RNA–RNA interaction sites

Florian Eggenhofer, Pavankumar Videm, Teresa Müller, 2024, GigaScience.

CRISPRloci: comprehensive and accurate annotation of CRISPR–Cas systems

Omer S. Alkhnbashi, Shiraz A. Shah, R. Backofen, 2021, Nucleic Acids Res..

Integration of accessibility data from structure probing into RNA–RNA interaction prediction

R. Backofen, S. Montaseri, Martin Raden, 2018, bioRxiv.

Freiburg RNA tools: a central online resource for RNA-focused research and teaching

Rolf Backofen, Sebastian Will, Michael Hiller, 2018, Nucleic Acids Res..

The impact of various seed, accessibility and interaction constraints on sRNA target prediction- a systematic assessment

Rolf Backofen, Rick Gelhausen, Martin Raden, 2020, BMC Bioinformatics.

CopomuS—Ranking Compensatory Mutations to Guide RNA-RNA Interaction Verification Experiments

Rolf Backofen, Martin Raden, Fabio Gutmann, 2020, International journal of molecular sciences.

IntaRNAhelix-composing RNA-RNA interactions from stable inter-molecular helices boosts bacterial sRNA target prediction

I. Hofacker, R. Backofen, S. Will, 2019, J. Bioinform. Comput. Biol..

ShaKer: RNA SHAPE prediction using graph kernel

Rolf Backofen, Fabrizio Costa, Soheila Montaseri, 2019, Bioinform..

Constraint Maximal Inter-molecular Helix Lengths within RNA-RNA Interaction Prediction Improves Bacterial sRNA Target Prediction

Rolf Backofen, Sebastian Will, Ivo L. Hofacker, 2019, BIOINFORMATICS.

Interactive implementations of thermodynamics-based RNA structure and RNA–RNA interaction prediction approaches for example-driven teaching

Rolf Backofen, Mostafa Mahmoud Mohamed, Syed Mohsin Ali, 2018, PLoS computational biology.

pourRNA - a time- and memory-efficient approach for the guided exploration of RNA energy landscapes

Gregor Entzian, Martin Raden, 2019, Bioinform..

Structure-aware machine learning identifies microRNAs operating as Toll-like receptor 7/8 ligands

R. Backofen, T. Wallach, S. Lehnardt, 2021, RNA biology.

MicroRNA-100-5p and microRNA-298-5p released from apoptotic cortical neurons are endogenous Toll-like receptor 7/8 ligands that contribute to neurodegeneration

Rui S. R. Machado, R. Backofen, M. Futschik, 2021, Molecular Neurodegeneration.

An Integrated Database of Small RNAs and Their Interplay With Transcriptional Gene Regulatory Networks in Corynebacteria

R. Backofen, J. Baumbach, V. Azevedo, 2021, Frontiers in Microbiology.