Timothy J. Close

发表

De novo meta-assembly of ultra-deep sequencing data

Stefano Lonardi, Hamid Mirebrahim, Timothy J. Close, 2015, Bioinform..

Combinatorial Pooling Enables Selective Sequencing of the Barley Gene Space

Gianfranco Ciardo, Marco Beccuti, Stefano Lonardi, 2013, PLoS Comput. Biol..

Progress On Physical Mapping Of The Gene-Space Of Barley

Stefano Lonardi, Timothy J. Close, Steve Wanamaker, 2007 .

The Hordeum Toolbox - The Barley CAP Genotype and Phenotype Resource

Timothy J. Close, Julie A. Dickerson, Gary J. Muehlbauer, 2012 .

Barcoding-free BAC Pooling Enables Combinatorial Selective Sequencing of the Barley Gene Space pdf

Gianfranco Ciardo, Marco Beccuti, Stefano Lonardi, 2011, ArXiv.

Computing the Minimal Tiling Path from a Physical Map by Integer Linear Programming

Stefano Lonardi, Serdar Bozdag, Timothy J. Close, 2008, WABI.

A Graph-Theoretical Approach to the Selection of the Minimum Tiling Path from a Physical Map

Stefano Lonardi, Serdar Bozdag, Timothy J. Close, 2013, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Cofferdams: An Integral Part of Small Hydro Design

Timothy J. Close, Ashok K. Rajpal, 1989 .

Scrible: Ultra-Accurate Error-Correction of Pooled Sequenced Reads

Gianfranco Ciardo, Marco Beccuti, Stefano Lonardi, 2015, WABI.

A Compartmentalized Approach to the Assembly of Physical Maps

Stefano Lonardi, Serdar Bozdag, Timothy J. Close, 2007, BIBE.

CLARK, accurate and efficient classification of DNA sequences

Stefano Lonardi, Timothy J. Close, Steve Wanamaker, 2014, BCB.

Efficient selection of unique and popular oligos for large EST databases

Tao Jiang, Stefano Lonardi, Timothy J. Close, 2004, Bioinform..

Accurate Construction of Consensus Genetic Maps via Integer Linear Programming

Stefano Lonardi, Yonghui Wu, Timothy J. Close, 2011, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Detecting single-feature polymorphisms using oligonucleotide arrays and robustified projection pursuit

Jin Xu, Timothy J. Close, Steve Wanamaker, 2005, Bioinform..

When less is more: 'slicing' sequencing data improves read decoding accuracy and de novo assembly quality

Gianfranco Ciardo, Stefano Lonardi, Hamid Mirebrahim, 2015, Bioinform..

Accurate Decoding of Pooled Sequenced Data Using Compressed Sensing

Atri Rudra, Gianfranco Ciardo, Stefano Lonardi, 2013, WABI.

Efficient Selection of Unique and Popular Oligos for Large EST Databases

Tao Jiang, Stefano Lonardi, Timothy J. Close, 2003, CPM.

A Graph-Theoretic Approach to Compute Minimal Tiling Path from a Physical Map

Stefano Lonardi, Serdar Bozdag, Timothy J. Close, 2009 .

OligoSpawn: a software tool for the design of overgo probes from large unigene datasets

Tao Jiang, Stefano Lonardi, Timothy J. Close, 2006, BMC Bioinformatics.

A compartmentalized approach to the assembly of physical maps

Stefano Lonardi, Serdar Bozdag, Timothy J. Close, 2007, 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering.

Deconvoluting BAC-Gene Relationships Using a Physical Map

Stefano Lonardi, Yonghui Wu, Timothy J. Close, 2008, J. Bioinform. Comput. Biol..

Efficient and Accurate Construction of Genetic Linkage Maps from Noisy and Missing Genotyping Data

Stefano Lonardi, Yonghui Wu, Timothy J. Close, 2007, WABI.

De novo assembly of ultra-deep sequencing data

Stefano Lonardi, Hamid Mirebrahim, Timothy J. Close, 2014, BCB.

When Less is More: “Slicing” Sequencing Data Improves Read Decoding Accuracy and De Novo Assembly Quality

Gianfranco Ciardo, Stefano Lonardi, Hamid Mirebrahim, 2015, bioRxiv.

Root-specific transcript profiling of contrasting rice genotypes in response to salinity stress.

Ute Baumann, Timothy J. Close, Harkamal Walia, 2011, Molecular plant.

Sequencing of 15 622 gene‐bearing BACs clarifies the gene‐dense regions of the barley genome

Marco Beccuti, Stefano Lonardi, Serdar Bozdag, 2015, The Plant journal : for cell and molecular biology.

An improved method to identify BAC clones using pooled overgos

Timothy J. Close, Kavitha Madishetty, Pascal Condamine, 2006, Nucleic acids research.

Population Structure and Linkage Disequilibrium in U.S. Barley Germplasm: Implications for Association Mapping

Timothy J. Close, Prasanna R. Bhat, Gary J. Muehlbauer, 2010 .

Coupling expressed sequences and bacterial artificial chromosome resources to access the barley genome

Stefano Lonardi, Timothy J. Close, Steve Wanamaker, 2018 .

Cowpea–Soybean Synteny Clarified through an Improved Genetic Map

Timothy J. Close, Steve Wanamaker, Mitchell R. Lucas, 2011 .

Plant responses to cellular dehydration during environmental stress

Timothy J. Close, T. Close, E. Bray, 1993 .

Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties

Rajeev K. Varshney, Timothy J. Close, David F. Marshall, 2006, Proceedings of the National Academy of Sciences.

The Hordeum Toolbox: The Barley Coordinated Agricultural Project Genotype and Phenotype Resource

Timothy J. Close, Julie A. Dickerson, Gary J. Muehlbauer, 2012 .

Patterns of polymorphism and linkage disequilibrium in cultivated barley

Timothy J. Close, Gary Muehlbauer, Robbie Waugh, 2010, Theoretical and Applied Genetics.

Efficient and Accurate Construction of Genetic Linkage Maps from the Minimum Spanning Tree of a Graph

Stefano Lonardi, Timothy J. Close, Prasanna R. Bhat, 2008, PLoS genetics.

Mapping translocation breakpoints using a wheat microarray

Timothy J. Close, Steve Wanamaker, Jan T. Svensson, 2007, Nucleic acids research.

Genome resources for climate-resilient cowpea, an essential crop for food security

Stefano Lonardi, Serdar Bozdag, Ousmane Boukar, 2016, bioRxiv.

An Improved Consensus Linkage Map of Barley Based on Flow‐Sorted Chromosomes and Single Nucleotide Polymorphism Markers

Stefano Lonardi, Timothy J. Close, Matthew J. Moscou, 2011 .

A consensus genetic map of cowpea [Vigna unguiculata (L) Walp.] and synteny based on EST-derived SNPs

Timothy J. Close, Steve Wanamaker, Prasanna R. Bhat, 2009, Proceedings of the National Academy of Sciences.

Reconstruction of monocotelydoneous proto-chromosomes reveals faster evolution in plants than in animals

Joachim Messing, Timothy J. Close, Emmanuel Courcelle, 2009, Proceedings of the National Academy of Sciences.