Tamotsu Noguchi

发表

POODLE-I: Disordered Region Prediction by Integrating POODLE Series and Structural Information Predictors Based on a Workflow Approach

Shuichi Hirose, Kana Shimizu, Tamotsu Noguchi, 2010, Silico Biol..

POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions

Yutaka Kuroda, Shuichi Hirose, Kana Shimizu, 2007, Bioinform..

Development of Molecular Dynamics Simulation Based Flexible Docking System

Masami Takata, Kazuki Joe, Tamotsu Noguchi, 2007, PDPTA.

Biological- and Chemical- Parallel Applications on a PC Cluster

Makoto Ando, Tamotsu Noguchi, Yutaka Akiyama, 1999, ISHPC.

Large-Scale Computing for Protein-Protein Binding Free Energy Calculation

Yoichi Muraoka, Sayaka Akioka, Tamotsu Noguchi, 2008, PDPTA.

Identifying Protein Short Linear Motifs by Position-Specific Scoring Matrix

Hayato Yamana, Tamotsu Noguchi, Chun Fang, 2016, ICSI.

Condensing position-specific scoring matrixs by the Kidera factors for ligand-binding site prediction

Hayato Yamana, Tamotsu Noguchi, Chun Fang, 2015, Int. J. Data Min. Bioinform..

ESCAPE: Parallel Tree Search System for Conformational Analysis of Peptides

Makoto Ando, Tamotsu Noguchi, Yutaka Akiyama, 1999, PDPTA.

Simplified sequence-based method for ATP-binding prediction using contextual local evolutionary conservation

Hayato Yamana, Tamotsu Noguchi, Chun Fang, 2014, Algorithms for Molecular Biology.

Parallel PDB Data Retriever "PDB Diving Booster"

Tamotsu Noguchi, Yutaka Akiyama, Kentaro Onizuka, 1997, ISHPC.

Feature Selection Based on Physicochemical Properties of Redefined N-term Region and C-term Regions for Predicting Disorder

Yoichi Muraoka, Shuichi Hirose, Kana Shimizu, 2005, 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology.

PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB)

Hideo Matsuda, Tamotsu Noguchi, Yutaka Akiyama, 2001, Nucleic Acids Res..

Using Data Compression for Multidimensional Distribution Analysis

Hideo Matsuda, Tamotsu Noguchi, Yutaka Akiyama, 2002, IEEE Intell. Syst..

Predicting mostly disordered proteins by using structure-unknown protein data

Yoichi Muraoka, Shuichi Hirose, Kana Shimizu, 2007, BMC Bioinform..

PDB-REPRDB: A Database of Representative Protein Chains in PDB (Protein Data Bank)

Tamotsu Noguchi, Yutaka Akiyama, Kentaro Onizuka, 1997, ISMB.

BIOINFORMATICS APPLICATIONS NOTE doi:10.1093/bioinformatics/btm330 Structural bioinformatics

Shuichi Hirose, Kana Shimizu, Tamotsu Noguchi, 2022 .

Using Data Compression for Multidimensional Analysis

Hideo Matsuda, Tamotsu Noguchi, Yutaka Akiyama, 2002 .

SAHG, a comprehensive database of predicted structures of all human proteins

Kengo Kinoshita, Kana Shimizu, Tamotsu Noguchi, 2010, Nucleic Acids Res..

Development of an SVM based Prediction System for Metalbinding Sites in Protein

Masami Takata, Kazuki Joe, Masami Nakazawa, 2007, PDPTA.

Optimization and evaluation of parallel molecular dynamics simulation on blue gene/L

Tamotsu Noguchi, Junta Doi, Masakazu Sekijima, 2007, Parallel and Distributed Computing and Networks.

Analysis of evolutionary conservation patterns and their influence on identifying protein functional sites

Hayato Yamana, Tamotsu Noguchi, Chun Fang, 2014, J. Bioinform. Comput. Biol..

MFSPSSMpred: identifying short disorder-to-order binding regions in disordered proteins based on contextual local evolutionary conservation

Hayato Yamana, Tamotsu Noguchi, Chun Fang, 2013, BMC Bioinformatics.

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*

Akira R. Kinjo, Kiyoko F. Aoki-Kinoshita, Kiyoshi Asai, 2010, J. Biomed. Semant..

Employing A* Algorithm in Parallel Multiple Protein Sequence Alignment

Tamotsu Noguchi, Yutaka Akiyama, Makoto Ando, 1997 .

PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB) in 2003

Tamotsu Noguchi, Yutaka Akiyama, Y. Akiyama, 2003, Nucleic Acids Res..

Quick selection of representative protein chain sets based on customizable requirements

Hideo Matsuda, Makoto Ando, Tamotsu Noguchi, 2000, Bioinform..

Parallelization of Space Plasma Particle Simulation

Makoto Ando, Hiroshi Matsumoto, Tamotsu Noguchi, 1997, ISHPC.

PAPIA (Parallel Protein Information Analysis) System and MolTreC Parallel Molecular Dynamics Simulator Running on a Compact 8-node Linux PC Cluster

Tamotsu Noguchi, Yutaka Akiyama, Makoto Ando, 1999 .

Sequence-Based Prediction of Molecular Recognition Features in Disordered Proteins

Hayato Yamana, Tamotsu Noguchi, Chun Fang, 2013 .

Free Energy Landscape Analysis System Based on Parallel Molecular Dynamics Simulation

Shinya Honda, Tamotsu Noguchi, Masakazu Sekijima, 2007 .

Fellowships, Grants, & Awards

Yoichi Muraoka, Shuichi Hirose, Kana Shimizu, 2005, Environmental Health Perspectives.

Predicting the protein disordered region using modified position specific scoring matrix

Yoichi Muraoka, Shuichi Hirose, Kana Shimizu, 2004 .

ESPRESSO: A system for estimating protein expression and solubility in protein expression systems

Shuichi Hirose, Tamotsu Noguchi, T. Noguchi, 2013, Proteomics.

Systematic comparison of catalytic mechanisms of hydrolysis and transfer reactions classified in the EzCatDB database

Tamotsu Noguchi, Yutaka Akiyama, Nozomi Nagano, 2006, Proteins.

Prediction of protein motions from amino acid sequence and its application to protein-protein interaction

Hiroshi Wako, Shigeru Endo, Shuichi Hirose, 2010, BMC Structural Biology.

Statistical analysis of features associated with protein expression/solubility in an in vivo Escherichia coli expression system and a wheat germ cell-free expression system.

Shuichi Hirose, Tamotsu Noguchi, Yorimasa Suwa, 2011, Journal of biochemistry.