David Osumi-Sutherland

发表

obo-relations: 2015-10-29 release

Chris Mungall, Melissa Haendel, James A. Overton, 2015 .

FUNCARO: A Functional Extension to CARO

David Osumi-Sutherland, D. Osumi-Sutherland, 2011, ICBO.

Cell ontology in an age of data-driven cell classification

David Osumi-Sutherland, 2017, BMC Bioinformatics.

Caro 2.0

David Osumi-Sutherland, D. Osumi-Sutherland, 2011, ICBO.

The Drosophila anatomy ontology

David Osumi-Sutherland, Marta Costa, Simon Reeve, 2013, J. Biomed. Semant..

A strategy for building neuroanatomy ontologies

Alan Ruttenberg, J. Douglas Armstrong, Chris Mungall, 2012, Bioinform..

ROBOT: A command-line tool for ontology development

Chris Mungall, James A. Overton, David Osumi-Sutherland, 2015, ICBO.

The Drosophila phenotype ontology

David Osumi-Sutherland, Georgios V. Gkoutos, Steven J. Marygold, 2013, J. Biomed. Semant..

Using OWL reasoning to support the generation of novel gene sets for enrichment analysis

Helen E. Parkinson, David Osumi-Sutherland, Mélanie Courtot, 2018, J. Biomed. Semant..

The Drosophila anatomy ontology

David Osumi-Sutherland, Clare Pilgrim, Marta Costa, 2019 .

PhenoImageShare: an image annotation and query infrastructure

Helen E. Parkinson, David Osumi-Sutherland, Tony Burdett, 2016, J. Biomed. Semant..

Human Cell Atlas Ontology

Simon Jupp, David Osumi-Sutherland, Danielle Welter, 2018, ICBO.

Reconciling Ontology Definitions using the Ontology Pattern Reconciliation Workbench and the DOSDP Framework

David Osumi-Sutherland, Nicolas Matentzoglu, 2018, ICBO.

A strategy for building neuroanatomy ontologies

Alan Ruttenberg, J. Douglas Armstrong, Chris Mungall, 2012, Bioinform..

Big data and single cell transcriptomics: implications for ontological representation

Alexander D. Diehl, Brian D. Aevermann, Richard H. Scheuermann, 2018, bioRxiv.

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability

Alan Ruttenberg, Alexander D. Diehl, Judith A. Blake, 2016, J. Biomed. Semant..

Modularization for the Cell Ontology

Alexander D. Diehl, Chris Mungall, Carlo Torniai, 2011, ICBO.

Dead simple OWL design patterns

Chris Mungall, James P. Balhoff, David Osumi-Sutherland, 2017, J. Biomed. Semant..

FlyBase: enhancing Drosophila Gene Ontology annotations

David Osumi-Sutherland, Paul C. Leyland, Michael Ashburner, 2008, Nucleic Acids Res..

The Virtual Fly Brain browser and query interface

Nicholas Burton, J. Douglas Armstrong, David Osumi-Sutherland, 2012, Bioinform..

Review of What is an ontology

David Osumi-Sutherland, 2010 .

Aligning the Human Phenotype and Mammalian Phenotype Ontology using Dead Simple Ontology Design Patterns

Peter N. Robinson, Chris Mungall, Melissa Haendel, 2017, ICBO.

Use of OWL within the Gene Ontology

Chris Mungall, David Osumi-Sutherland, Heiko Dietze, 2014, bioRxiv.

TermGenie – a web-application for pattern-based ontology class generation

Tanya Z. Berardini, Chris Mungall, David Osumi-Sutherland, 2014, J. Biomed. Semant..

Improving Interpretation of Cardiac Phenotypes and Enhancing Discovery With Expanded Knowledge in the Gene Ontology

Perry M. Elliott, Rachael P. Huntley, Judith A. Blake, 2018, Circulation. Genomic and precision medicine.

Virtual Fly Brain - Using OWL to Support the Mapping and Genetic Dissection of the Drosophila Brain

David Osumi-Sutherland, Marta Costa, Robert Court, 2014, OWLED.

Meeting report: advancing practical applications of biodiversity ontologies

Jie Zheng, David Osumi-Sutherland, John Wieczorek, 2014, Standards in Genomic Sciences.

Improvements to the Drosophila anatomy ontology

David Osumi-Sutherland, Steven J. Marygold, Marta Costa, 2015, ICBO.

CARO - The Common Anatomy Reference Ontology

José L. V. Mejino, Paula M. Mabee, David Osumi-Sutherland, 2008, Anatomy Ontologies for Bioinformatics.

Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology

Chris Mungall, Melissa Haendel, Paula M. Mabee, 2014, J. Biomed. Semant..

Cell, Chemical and Anatomical Views of the Gene Ontology: Mapping to a Roche Controlled Vocabulary

Helen E. Parkinson, David Osumi-Sutherland, Mélanie Courtot, 2015, SWAT4LS.

Phenotype Ontologies Traversing All The Organisms (POTATO) workshop aims to reconcile logical definitions across species. Workshop Report

Melissa Haendel, Anne E. Thessen, James P. Balhoff, 2018 .

Integrating expression intersections into FlyBase and Virtual Fly Brain

David Osumi-Sutherland, Alex Holmes, Gillian Milburn, 2019 .

A Simple Standard for Sharing Ontological Mappings (SSSOM) pdf

Christopher G Chute, Simon Jupp, Tania Tudorache, 2021, Database J. Biol. Databases Curation.

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies

Bjoern Peters, Alan Ruttenberg, David Osumi-Sutherland, 2021, Database J. Biol. Databases Curation.

Taking shortcuts with OWL using safe macros

Alan Ruttenberg, Chris Mungall, David Osumi-Sutherland, 2010 .

Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems

Benjamin M. Good, David Osumi-Sutherland, Seth Carbon, 2019, Nature Genetics.

Taking shortcuts with OWL using safe macros

Alan Ruttenberg, David Osumi-Sutherland, Christopher J. Mungall, 2011 .

The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species

Tudor Groza, Damian Smedley, Simon Jupp, 2019, Nucleic Acids Res..

Virtual Fly Brain

J. Douglas Armstrong, David Osumi-Sutherland, Michael Ashburner, 2010 .

Systematic Analysis of Experimental Phenotype Data Reveals Gene Functions

Nigel W. Hardy, Paul N. Schofield, Robert Hoehndorf, 2013, PloS one.

Climate predictions gain surer footing

David Osumi-Sutherland, 2004 .