K. Rychel

发表

Machine Learning of Pseudomonas aeruginosa transcriptomes identifies independently modulated sets of genes associated with known transcriptional regulators

Anand V. Sastry, B. Palsson, J. Pogliano, 2021, bioRxiv.

Emerging themes and unifying concepts underlying cell behavior regulation by the pericellular space.

Padmini Rangamani, Stephanie I Fraley, Kiersten E Scott, 2019, Acta biomaterialia.

A multi-scale expression and regulation knowledge base for Escherichia coli

Daniel C. Zielinski, Anand V. Sastry, Ye Gao, 2023, Nucleic acids research.

Pan-Genome Analysis of Transcriptional Regulation in Six Salmonella enterica Serovar Typhimurium Strains Reveals Their Different Regulatory Structures

Anand V. Sastry, Yuan Yuan, Yara Seif, 2022, mSystems.

Pan-genomic analysis of transcriptional modules across Salmonella Typhimurium reveals the regulatory landscape of different strains

Anand V. Sastry, Bernhard O. Palsson, Yuan Yuan, 2022, bioRxiv.

Mining all publicly available expression data to compute dynamic microbial transcriptional regulatory networks

Anand V. Sastry, Zachary B. Haiman, B. Palsson, 2021, bioRxiv.

A multi-scale transcriptional regulatory network knowledge base for Escherichia coli

Daniel C. Zielinski, Anand V. Sastry, B. Palsson, 2021, bioRxiv.

Machine Learning Uncovers a Data-Driven Transcriptional Regulatory Network for the Crenarchaeal Thermoacidophile Sulfolobus acidocaldarius

Anand V. Sastry, B. Palsson, S. Poudel, 2021, bioRxiv.

Elucidation of independently modulated genes in Streptococcus pyogenes reveals carbon sources that control its expression of hemolytic toxins

Daniel C. Zielinski, Anand V. Sastry, V. Nizet, 2022, bioRxiv.

Machine Learning of All Mycobacterium tuberculosis H37Rv RNA-seq Data Reveals a Structured Interplay between Metabolism, Stress Response, and Infection

Anand V. Sastry, B. Palsson, S. Poudel, 2021, bioRxiv.

Microporous Polymer Scaffolds for the Transplantation of Embryonic Stem Cell Derived Pancreatic Progenitors to a Clinically Translatable Site for the Treatment of Type I Diabetes.

Tadas Kasputis, L. Shea, B. Dye, 2018, ACS biomaterials science & engineering.

Independent component analysis reveals 49 independently modulated gene sets within the global transcriptional regulatory architecture of multidrug-resistant Acinetobacter baumannii

Anand V. Sastry, R. Szubin, S. Poudel, 2024, mSystems.

Machine learning analysis of RB-TnSeq fitness data predicts functional gene modules in Pseudomonas putida KT2440

G. Beckham, Kevin Rychel, A. Borchert, 2024, mSystems.

Proteome allocation is linked to transcriptional regulation through a modularized transcriptome

Anand V. Sastry, D. Gonzalez, Y. Hefner, 2023, bioRxiv.

Predicting stress response and improved protein overproduction in Bacillus subtilis

C. Lloyd, K. Zengler, C. Zuñiga, 2022, npj Systems Biology and Applications.

Systems biology of competency in Vibrio natriegens is revealed by applying novel data analytics to the transcriptome.

Jongoh Shin, Kevin Rychel, B. Palsson, 2023, Cell reports.