Gajendra P. S. Raghava

发表

Designing of peptides with desired half-life in intestine-like environment

Arun Sharma, Deepak Singla, Mamoon Rashid, 2014, BMC Bioinformatics.

Prediction of FAD interacting residues in a protein from its primary sequence using evolutionary information

Gajendra P. S. Raghava, Nitish K. Mishra, Gajendra P.S. Raghava, 2010, BMC Bioinformatics.

Support Vector Machine-based method for predicting subcellular localization of mycobacterial proteins using evolutionary information and motifs

Mamoon Rashid, Gajendra P. S. Raghava, Sudipto Saha, 2007, BMC Bioinformatics.

Human Opinion Inspired Feature Selection Strategy for Predicting the Pleasantness of a Molecule

Rishemjit Kaur, Ritesh Kumar, Amol P. Bhondekar, 2018 .

Prediction of nuclear proteins using SVM and HMM models

Gajendra P. S. Raghava, Manish Kumar, Gajendra P.S. Raghava, 2009, BMC Bioinformatics.

Prediction of vitamin interacting residues in a vitamin binding protein using evolutionary information

Gajendra P. S. Raghava, Bharat Panwar, Sudheer Gupta, 2013, BMC Bioinformatics.

HaptenDB: a comprehensive database of haptens, carrier proteins and anti-hapten antibodies

Gajendra P. S. Raghava, Shilpy Srivastava, Mahender Kumar Singh, 2006, Bioinform..

Hemolytik: a database of experimentally determined hemolytic and non-hemolytic peptides

Gajendra P. S. Raghava, Priya Anand, Kumardeep Chaudhary, 2013, Nucleic Acids Res..

Prediction of α‐turns in proteins using PSI‐BLAST profiles and secondary structure information

Gajendra P. S. Raghava, Harpreet Kaur, Gajendra P.S. Raghava, 2004 .

SVM based method for predicting HLA-DRB1*0401 binding peptides in an antigen sequence

Gajendra P. S. Raghava, Manoj Bhasin, Gajendra P.S. Raghava, 2004, Bioinform..

VGIchan : Prediction and Classification of Voltage-Gated Ion Channels

Gajendra P. S. Raghava, Sudipto Saha, Balvinder Singh, 2012 .

Prediction of Neurotoxins Based on Their Function and Source

Gajendra P. S. Raghava, Sudipto Saha, Gajendra P.S. Raghava, 2007, Silico Biol..

A Web Server and Mobile App for Computing Hemolytic Potency of Peptides

Ritesh Kumar, Gajendra P. S. Raghava, Priya Anand, 2016, Scientific Reports.

Prediction of Antitubercular Peptides From Sequence Information Using Ensemble Classifier and Hybrid Features

Gajendra P. S. Raghava, Sherry Bhalla, Salman Sadullah Usmani, 2018, Front. Pharmacol..

Quantification of the variation in percentage identity for protein sequence alignments

Gajendra P. S. Raghava, Geoffrey J. Barton, G. Barton, 2006, BMC Bioinformatics.

COPid: Composition Based Protein Identification

Gajendra P. S. Raghava, Manish Kumar, Varun Thakur, 2008, Silico Biol..

ParaPep: a web resource for experimentally validated antiparasitic peptide sequences and their structures

Gajendra P. S. Raghava, Priya Anand, Vineet Kumar, 2014, Database J. Biol. Databases Curation.

MHCBN: A comprehensive database of MHC/TAP binders/non-binders and T-cell epitopes

Gajendra P. S. Raghava, Manoj Bhasin, 2005 .

Identification of ATP binding residues of a protein from its primary sequence

Gajendra P. S. Raghava, Nitish K. Mishra, Jagat Singh Chauhan, 2009, BMC Bioinformatics.

Bteval: a Server for Evaluation of beta-turn Prediction Methods

Gajendra P. S. Raghava, Harpreet Kaur, Gajendra P.S. Raghava, 2003, J. Bioinform. Comput. Biol..

Prediction of subcellular localization of proteins using pairwise sequence alignment and support vector machine

Gajendra P. S. Raghava, Seungjin Choi, Jong Kyoung Kim, 2006, Pattern Recognit. Lett..

Prediction of uridine modifications in tRNA sequences

Gajendra P. S. Raghava, Bharat Panwar, Gajendra P.S. Raghava, 2014, BMC Bioinformatics.

Computer-aided prediction of antigen presenting cell modulators for designing peptide-based vaccine adjuvants

Gajendra P. S. Raghava, Kumardeep Chaudhary, Piyush Agrawal, 2017, Journal of Translational Medicine.

CCDB: a curated database of genes involved in cervix cancer

Gajendra P. S. Raghava, Subhash M. Agarwal, Dhwani Raghav, 2010, Nucleic Acids Res..

OXBench: A benchmark for evaluation of protein multiple sequence alignment accuracy

Gajendra P. S. Raghava, Jonathan D. Barber, Geoffrey J. Barton, 2003, BMC Bioinformatics.

Identification of NAD interacting residues in proteins

Gajendra P. S. Raghava, Hifzur Rahman Ansari, Gajendra P.S. Raghava, 2010, BMC Bioinformatics.

CancerPPD: a database of anticancer peptides and proteins

Gajendra P. S. Raghava, Priya Anand, Sudheer Gupta, 2014, Nucleic Acids Res..

ProPred1: Prediction of Promiscuous MHC Class-I Binding Sites

Gajendra P. S. Raghava, Harpreet Singh, Gajendra P.S. Raghava, 2003, Bioinform..

Challenges in Prediction of different Cancer Stages using Gene Expression Profile of Cancer Patients

Gajendra P. S. Raghava, Suresh Sharma, Sherry Bhalla, 2017, BCB.

Identification of Proteins Secreted by Malaria Parasite into Erythrocyte using SVM and PSSM profiles

Gajendra P. S. Raghava, Ruchi Verma, Sukhwinder Kaur, 2008, BMC Bioinformatics.

Identification of DNA-binding proteins using support vector machines and evolutionary profiles

Gajendra P. S. Raghava, Manish Kumar, M. Michael Gromiha, 2007, BMC Bioinformatics.

An evaluation of ß-turn prediction methods

Gajendra P. S. Raghava, Harpreet Kaur, Gajendra P.S. Raghava, 2002, Bioinform..

SATPdb: a database of structurally annotated therapeutic peptides

Gajendra P. S. Raghava, Kumardeep Chaudhary, Salman Sadullah Usmani, 2015, Nucleic Acids Res..

Benchmarking of different molecular docking methods for protein-peptide docking

Gajendra P. S. Raghava, Sandeep Singh, Piyush Agrawal, 2019, BMC Bioinformatics.

ccPDB: compilation and creation of data sets from Protein Data Bank

Gajendra P. S. Raghava, M. Michael Gromiha, Jagat Singh Chauhan, 2012, Nucleic Acids Res..

A neural‐network based method for prediction of γ‐turns in proteins from multiple sequence alignment

Gajendra P. S. Raghava, Harpreet Kaur, Gajendra P.S. Raghava, 2003, Protein science : a publication of the Protein Society.

Computer-aided designing of immunosuppressive peptides based on IL-10 inducing potential

Gajendra P. S. Raghava, Harpreet Kaur, Salman Sadullah Usmani, 2017, Scientific Reports.

PEPlife: A Repository of the Half-life of Peptides

Gajendra P. S. Raghava, Harpreet Kaur, Priya Anand, 2016, Scientific Reports.

ProPred: prediction of HLA-DR binding sites

Gajendra P. S. Raghava, Harpreet Singh, Gajendra P.S. Raghava, 2001, Bioinform..

Novel in silico tools for designing peptide-based subunit vaccines and immunotherapeutics

Gajendra P. S. Raghava, Salman Sadullah Usmani, Piyush Agrawal, 2016, Briefings Bioinform..

Oxypred: Prediction and Classification of Oxygen-Binding Proteins

Gajendra P. S. Raghava, S. Muthukrishnan, Aarti Garg, 2008, Genom. Proteom. Bioinform..

Spectral Repeat Finder (SRF): identification of repetitive sequences using Fourier transformation

Gajendra P. S. Raghava, Ramakrishna Ramaswamy, Biju Issac, 2004, Bioinform..

BTXpred: Prediction of Bacterial Toxins

Gajendra P. S. Raghava, Sudipto Saha, Gajendra P.S. Raghava, 2007, Silico Biol..

MHCBN: a comprehensive database of MHC binding and non-binding peptides

Gajendra P. S. Raghava, Harpreet Singh, Manoj Bhasin, 2003, Bioinform..

Locating probable genes using Fourier transform approach

Gajendra P. S. Raghava, Harpreet Kaur, Biju Issac, 2002, Bioinform..

Analysis and prediction of antibacterial peptides

Gajendra P. S. Raghava, Sneh Lata, B. K. Sharma, 2007, BMC Bioinformatics.

Prediction of Antimicrobial Potential of a Chemically Modified Peptide From Its Tertiary Structure

Gajendra P. S. Raghava, Piyush Agrawal, Gajendra P.S. Raghava, 2018, Front. Microbiol..

Prediction of guide strand of microRNAs from its sequence and secondary structure

Gajendra P. S. Raghava, Firoz Ahmed, Hifzur Rahman Ansari, 2009, BMC Bioinformatics.

VICMpred: An SVM-based Method for the Prediction of Functional Proteins of Gram-negative Bacteria Using Amino Acid Patterns and Composition

Gajendra P. S. Raghava, Sudipto Saha, Gajendra P.S. Raghava, 2006, Genom. Proteom. Bioinform..

ccPDB 2.0: an updated version of datasets created and compiled from Protein Data Bank

Gajendra P. S. Raghava, Rajesh Kumar, Vinod Kumar, 2019, Database.

GPCRpred: an SVM-based method for prediction of families and subfamilies of G-protein coupled receptors

Gajendra P. S. Raghava, Manoj Bhasin, Gajendra P.S. Raghava, 2004, Nucleic Acids Res..

Pcleavage: an SVM based method for prediction of constitutive proteasome and immunoproteasome cleavage sites in antigenic sequences

Gajendra P. S. Raghava, Manoj Bhasin, Gajendra P.S. Raghava, 2005, Nucleic Acids Res..

KiDoQ: using docking based energy scores to develop ligand based model for predicting antibacterials

Gajendra P. S. Raghava, Aarti Garg, Rupinder Tewari, 2010, BMC Bioinformatics.

BcePred: Prediction of Continuous B-Cell Epitopes in Antigenic Sequences Using Physico-chemical Properties

Gajendra P. S. Raghava, Sudipto Saha, Gajendra P.S. Raghava, 2004, ICARIS.

CPPsite 2.0: a repository of experimentally validated cell-penetrating peptides

Gajendra P. S. Raghava, Kumardeep Chaudhary, Salman Sadullah Usmani, 2015, Nucleic Acids Res..

Machine learning techniques in disease forecasting: a case study on rice blast prediction

Gajendra P. S. Raghava, Rakesh Kaundal, Amar S. Kapoor, 2006, BMC Bioinformatics.

AntiBP2: improved version of antibacterial peptide prediction

Gajendra P. S. Raghava, Nitish K. Mishra, Sneh Lata, 2010, BMC Bioinformatics.

BhairPred: prediction of β-hairpins in a protein from multiple alignment information using ANN and SVM techniques

Gajendra P. S. Raghava, Manish Kumar, Manoj Bhasin, 2005, Nucleic Acids Res..

ImmunoSPdb: an archive of immunosuppressive peptides

Gajendra P. S. Raghava, Salman Sadullah Usmani, Piyush Agrawal, 2019, Database J. Biol. Databases Curation.

lncRNome: a comprehensive knowledgebase of human long noncoding RNAs

Gajendra P. S. Raghava, Sakshi Jain, Koustav Pal, 2013, Database J. Biol. Databases Curation.

ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST

Gajendra P. S. Raghava, Manoj Bhasin, Gajendra P.S. Raghava, 2004, Nucleic Acids Res..

Prediction of Cα-H·O and Cα-H·π Interactions in Proteins Using Recurrent Neural Network

Gajendra P. S. Raghava, Harpreet Kaur, 2006, Silico Biol..

Correlation and prediction of gene expression level from amino acid and dipeptide composition of its protein

Gajendra P. S. Raghava, Joon H. Han, Gajendra P.S. Raghava, 2005, BMC Bioinformatics.

AntiTbPdb: a knowledgebase of anti-tubercular peptides

Gajendra P. S. Raghava, Rajesh Kumar, Vinod Kumar, 2018, Database J. Biol. Databases Curation.

Prediction of Polyadenylation Signals in Human DNA Sequences using Nucleotide Frequencies

Gajendra P. S. Raghava, Manish Kumar, Firoz Ahmed, 2009, Silico Biol..

Virtual Screening of potential drug-like inhibitors against Lysine/DAP pathway of Mycobacterium tuberculosis

Gajendra P. S. Raghava, Aarti Garg, Rupinder Tewari, 2010, BMC Bioinformatics.

A Machine Learning Based Method for the Prediction of Secretory Proteins Using Amino Acid Composition, Their Order and Similarity-Search

Gajendra P. S. Raghava, Aarti Garg, Gajendra P.S. Raghava, 2008, Silico Biol..

ProGlycProt: a repository of experimentally characterized prokaryotic glycoproteins

Gajendra P. S. Raghava, Alka Rao, Jagat Singh Chauhan, 2011, Nucleic Acids Res..

NPACT: Naturally Occurring Plant-based Anti-cancer Compound-Activity-Target database

Gajendra P. S. Raghava, Subhash M. Agarwal, Harinder Singh, 2012, Nucleic Acids Res..

Open Access Research Article Prediction of Gtp Interacting Residues, Dipeptides and Tripeptides in a Protein from Its Evolutionary Information

Gajendra P. S. Raghava, Nitish K. Mishra, Jagat Singh Chauhan, 2022 .

GPCRsclass: a web tool for the classification of amine type of G-protein-coupled receptors

Gajendra P. S. Raghava, Manoj Bhasin, Gajendra P.S. Raghava, 2005, Nucleic Acids Res..

ESLpred2: improved method for predicting subcellular localization of eukaryotic proteins

Gajendra P. S. Raghava, Aarti Garg, Gajendra P.S. Raghava, 2008, BMC Bioinformatics.

BetaTPred: prediction of beta-TURNS in a protein using statistical algorithms

Gajendra P. S. Raghava, Harpreet Kaur, Gajendra P.S. Raghava, 2002, Bioinform..

PSLpred: prediction of subcellular localization of bacterial proteins

Gajendra P. S. Raghava, Manoj Bhasin, Aarti Garg, 2005, Bioinform..

AlgPred: prediction of allergenic proteins and mapping of IgE epitopes

Gajendra P. S. Raghava, Sudipto Saha, Gajendra P.S. Raghava, 2006, Nucleic Acids Res..

AntigenDB: an immunoinformatics database of pathogen antigens

Gajendra P. S. Raghava, Darren R. Flower, Hifzur Rahman Ansari, 2009, Nucleic Acids Res..

CPPsite: a curated database of cell penetrating peptides

Gajendra P. S. Raghava, Rahul Kumar, Kumardeep Chaudhary, 2012, Database J. Biol. Databases Curation.

PHDcleav: a SVM based method for predicting human Dicer cleavage sites using sequence and secondary structure of miRNA precursors

Gajendra P. S. Raghava, Firoz Ahmed, Rakesh Kaundal, 2013, BMC Bioinformatics.

AHTPDB: a comprehensive platform for analysis and presentation of antihypertensive peptides

Gajendra P. S. Raghava, Ravi Kumar, Kumardeep Chaudhary, 2014, Nucleic Acids Res..

A neural network method for prediction of ?-turn types in proteins using evolutionary information

Gajendra P. S. Raghava, Harpreet Kaur, Gajendra P.S. Raghava, 2004, Bioinform..

Computational Methods in Genome Research

Gajendra P. S. Raghava, Manoj Bhasin, Gajendra P.S. Raghava, 2006 .

A web-based resource for designing therapeutics against Ebola Virus

Gajendra P. S. Raghava, Kumardeep Chaudhary, Sandeep Kumar Dhanda, 2016, Scientific Reports.

Prioritization of anticancer drugs against a cancer using genomic features of cancer cells: A step towards personalized medicine

Gajendra P. S. Raghava, Kumardeep Chaudhary, Ankur Gautam, 2016, Scientific Reports.

Designing of promiscuous inhibitors against pancreatic cancer cell lines

Deepak Singla, Gajendra P. S. Raghava, Kumardeep Chaudhary, 2014, Scientific Reports.

BLAST-based structural annotation of protein residues using Protein Data Bank

Gajendra P. S. Raghava, Harinder Singh, Harinder Singh, 2016, Biology Direct.

Herceptin Resistance Database for Understanding Mechanism of Resistance in Breast Cancer Patients

Gajendra P. S. Raghava, Grish C. Varshney, Sudheer Gupta, 2014, Scientific Reports.

Prediction of Immunomodulatory potential of an RNA sequence for designing non-toxic siRNAs and RNA-based vaccine adjuvants

Gajendra P. S. Raghava, Kumardeep Chaudhary, Sandeep Kumar Dhanda, 2016, Scientific Reports.

PCMdb: Pancreatic Cancer Methylation Database

Gajendra P. S. Raghava, Kumardeep Chaudhary, Ankur Gautam, 2014, Scientific Reports.

Evaluation of Protein Dihedral Angle Prediction Methods

Gajendra P. S. Raghava, Harinder Singh, Harinder Singh, 2014, PloS one.

Prediction of allergenic proteins and mapping of IgE epitopes in allergens

Gajendra P. S. Raghava, Sudipto Saha, Gajendra P.S. Raghava, 2007 .

VaccineDA: Prediction, design and genome-wide screening of oligodeoxynucleotide-based vaccine adjuvants

Gajendra P. S. Raghava, Kumardeep Chaudhary, Sandeep Kumar Dhanda, 2015, Scientific Reports.

dbEM: A database of epigenetic modifiers curated from cancerous and normal genomes

Gajendra P. S. Raghava, Rahul Kumar, Gajendra P.S. Raghava, 2016, Scientific Reports.

A Web Resource for Designing Subunit Vaccine Against Major Pathogenic Species of Bacteria

Gajendra P. S. Raghava, Salman Sadullah Usmani, Gandharva Nagpal, 2018, Front. Immunol..