Karthik Shekhar

Identification of Cell Types from Single-Cell Transcriptomic Data.

Karthik Shekhar, Vilas Menon, V. Menon, 2019, Methods in molecular biology.

Dimensionality reduction in immunology : from viruses to cells

Karthik Shekhar, K. Shekhar, 2014 .

A single-cell survey of the small intestinal epithelium

Yarden Katz, Aviv Regev, Ramnik J. Xavier, 2017, Nature.

Hydrophobic CDR3 residues promote the development of self-reactive T cells

Andrew K. Sewell, Arup K. Chakraborty, Karthik Shekhar, 2016, Nature Immunology.

Spin models inferred from patient-derived viral sequence data faithfully describe HIV fitness landscapes.

Arup K Chakraborty, Andrew L. Ferguson, Mehran Kardar, 2013, Physical review. E, Statistical, nonlinear, and soft matter physics.

Spin models inferred from patient data faithfully describe HIV fitness landscapes and enable rational vaccine design

Andrew L. Ferguson, Mehran Kardar, Arup K. Chakraborty, 2013, 1306.2029.

Massively-parallel single nucleus RNA-seq with DroNc-seq

Aviv Regev, Feng Zhang, François Aguet, 2017, Nature Methods.

Statistical Linkage Analysis of Substitutions in Patient-Derived Sequences of Genotype 1a Hepatitis C Virus Nonstructural Protein 3 Exposes Targets for Immunogen Design

Matthew R. McKay, Raymond H. Y. Louie, I-Ming Hsing, 2014, Journal of Virology.

Comprehensive Identification and Spatial Mapping of Habenular Neuronal Types Using Single-Cell RNA-Seq

Aviv Regev, Alexander F. Schier, Karthik Shekhar, 2018, Current Biology.

Therapeutic Efficacy of Potent Neutralizing HIV-1-Specific Monoclonal Antibodies in SHIV-Infected Rhesus Monkeys

Michael S. Seaman, Florian Klein, Arup K. Chakraborty, 2013, Nature.