Can Kesmir

发表

Virus Encoded MHC-Like Decoys Diversify the Inhibitory KIR Repertoire

Rob J. De Boer, Paola Carrillo-Bustamante, Can Kesmir, 2013, PLoS Comput. Biol..

Degenerate T-cell Recognition of Peptides on MHC Molecules Creates Large Holes in the T-cell Repertoire

Rob J. De Boer, Can Kesmir, Jorg J. A. Calis, 2012, PLoS Comput. Biol..

Modelling the Human Immune System by Combining Bioinformatics and Systems Biology Approaches

Morten Nielsen, Ole Lund, Søren Brunak, 2006, Journal of biological physics.

Modeling the adaptive immune system: predictions and simulations

Morten Nielsen, Ole Lund, Søren Brunak, 2007, Bioinform..

VDJdb: a curated database of T-cell receptor sequences with known antigen specificity

Andrew K. Sewell, Paul G. Thomas, Dmitry Chudakov, 2017, Nucleic Acids Res..

Properties of MHC Class I Presented Peptides That Enhance Immunogenicity

Alessandro Sette, Jason Greenbaum, Björn Peters, 2013, PLoS Comput. Biol..

Estimating the Fitness Cost of Escape from HLA Presentation in HIV-1 Protease and Reverse Transcriptase

Sebastian Bonhoeffer, Christos J. Petropoulos, Mojgan Haddad, 2012, PLoS Comput. Biol..

Proteome Sampling by the HLA Class I Antigen Processing Pathway

Ilka Hoof, Can Kesmir, William H. Hildebrand, 2012, PLoS Comput. Biol..

Immunological bioinformatics

Morten Nielsen, Ole Lund, Søren Brunak, 2005, Computational molecular biology.

Clustering Patterns of Cytotoxic T-Lymphocyte Epitopes in Human Immunodeficiency Virus Type 1 (HIV-1) Proteins Reveal Imprints of Immune Evasion on HIV-1 Global Variation

Søren Brunak, Karina Yusim, Bette T. Korber, 2002, Journal of Virology.

Comprehensive Analysis of the Naturally Processed Peptide Repertoire: Differences between HLA-A and B in the Immunopeptidome

Ilka Hoof, Can Kesmir, I. Hoof, 2015, PloS one.

Amino Acid Similarity Accounts for T Cell Cross-Reactivity and for “Holes” in the T Cell Repertoire

Morten Nielsen, Ole Lund, Sune Frankild, 2008, PloS one.

VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium

Andrew K. Sewell, Dmitry Chudakov, Mikhail Shugay, 2019, Nucleic Acids Res..

Bioinformatic analysis of functional differences between the immunoproteasome and the constitutive proteasome

Vera van Noort, Paulien Hogeweg, Rob J. de Boer, 2003, Immunogenetics.

Biomarkers in cancer immunotherapy.

Ton N Schumacher, Can Kesmir, T. Schumacher, 2015, Cancer cell.