Stephen D Bentley

Pan-pathogen deep sequencing of nosocomial bacterial pathogens in Italy in spring 2020: a prospective cohort study.

Christine J. Boinett, Harry A. Thorpe, A. Schürch, 2024, The Lancet. Microbe.

International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact

Jukka Corander, Andrew J. Page, Pekka Marttinen, 2019, EBioMedicine.

Genomics Reveals the Worldwide Distribution of Multidrug-Resistant Serotype 6E Pneumococci

Andries J. van Tonder, J. Bray, S. Bentley, 2015, Journal of Clinical Microbiology.

Edinburgh Research Explorer Population genetic structure, antibiotic resistance, capsule switching and evolution of invasive pneumococci before conjugate vaccination in Malawi

W. Hanage, A. Kiran, A. Kadioglu, 2022 .

The population-level impact of Enterococcus faecalis genetics on intestinal colonization and extraintestinal infection

J. Top, T. Coque, Ana R. Freitas, 2023, Microbiology spectrum.

Identification of colonisation and virulence determinants of Streptococcus pneumoniae via experimental evolution in mouse infection models

S. Bentley, J. Hinton, H. Echlin, 2020, bioRxiv.