Christopher A. Penfold

发表

Correcting for link loss in causal network inference caused by regulator interference

Ying Wang, David A. Hodgson, Christopher A. Penfold, 2014, Bioinform..

Branch-recombinant Gaussian processes for analysis of perturbations in biological time series

Zoubin Ghahramani, Christopher A. Penfold, Lorenz Wernisch, 2018, bioRxiv.

Inferring orthologous gene regulatory networks using interspecies data fusion

Christopher A. Penfold, David L. Wild, Jonathan B. A. Millar, 2015, Bioinform..

Modeling Meiotic Chromosomes Indicates a Size Dependent Contribution of Telomere Clustering and Chromosome Rigidity to Homologue Juxtaposition

Neil D. Lawrence, Christopher A. Penfold, Paul E. Brown, 2012, PLoS Comput. Biol..

Bayesian parameter estimation in non-stationary semiflexible polymers from ensembles of trajectories

Christopher A. Penfold, 2018 .

Inferring the perturbation time from biological time course data

Magnus Rattray, Jing Yang, Christopher A. Penfold, 2016, Bioinform..

Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks

Christopher A. Penfold, David L. Wild, Katherine J. Denby, 2012, Bioinform..

High-Resolution Temporal Profiling of Transcripts during Arabidopsis Leaf Senescence Reveals a Distinct Chronology of Processes and Regulation[C][W][OA]

Christopher A. Penfold, Dafyd J. Jenkins, D. Wild, 2011, Plant Cell.

Arabidopsis Defense against Botrytis cinerea: Chronology and Regulation Deciphered by High-Resolution Temporal Transcriptomic Analysis[C][W][OA]

Christopher A. Penfold, Emma J. Cooke, Dafyd J. Jenkins, 2012, Plant Cell.

Transcriptional Dynamics Driving MAMP-Triggered Immunity and Pathogen Effector-Mediated Immunosuppression in Arabidopsis Leaves Following Infection with Pseudomonas syringae pv tomato DC3000[OPEN]

Christopher A. Penfold, Dafyd J. Jenkins, George R. Littlejohn, 2015, Plant Cell.

Bayesian inference of transcriptional branching identifies regulators of early germ cell development in humans

Christopher A. Penfold, John E. Reid, Zoubin Ghahramani, 2017, bioRxiv.

Network modeling to understand plant immunity.

Christopher A. Penfold, K. Denby, Oliver P. F. Windram, 2014, Annual review of phytopathology.

Modelling transcriptional networks in leaf senescence.

Christopher A. Penfold, V. Buchanan-Wollaston, 2014, Journal of experimental botany.

Stella modulates transcriptional and endogenous retrovirus programs during maternal-to-zygotic transition

Christopher A. Penfold, J. Marioni, M. Surani, 2017, eLife.

Branch-recombinant Gaussian processes for analysis of perturbations in biological time series

Christopher A. Penfold, John E. Reid, Zoubin Ghahramani, 2018, bioRxiv.

Time-Series Transcriptomics Reveals That AGAMOUS-LIKE22 Affects Primary Metabolism and Developmental Processes in Drought-Stressed Arabidopsis[CC-BY]

Christopher A. Penfold, Dafyd J. Jenkins, T. Lawson, 2016, Plant Cell.

High-Resolution Temporal Proﬁling of Transcripts during Arabidopsis Leaf Senescence Reveals a Distinct Chronology of Processes and Regulation

Christopher A. Penfold, Dafyd J. Jenkins, D. Wild, 2011 .

Title : Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks

Christopher A. Penfold, D. Wild, K. Denby, 2012 .

Bayesian inference of transcriptional branching identifies regulators of early germ cell development in humans

Christopher A. Penfold, John E. Reid, Zoubin Ghahramani, 2018, bioRxiv.

Tracing the emergence of primordial germ cells from bilaminar disc rabbit embryos and pluripotent stem cells.

Christopher A. Penfold, M. Surani, H. Nakauchi, 2021, Cell reports.

Mapping the biogenesis of forward programmed megakaryocytes from induced pluripotent stem cells

Christopher A. Penfold, M. Steindel, I. Mohorianu, 2021, bioRxiv.

Cell division- and DNA replication-free reprogramming of somatic nuclei for embryonic transcription

Christopher A. Penfold, Kazuya Matsumoto, K. Miyamoto, 2021, iScience.

Sequential enhancer state remodelling defines human germline competence and specification

Christopher A. Penfold, M. Surani, Toshihiro Kobayashi, 2022, Nature Cell Biology.

Building a stem cell-based primate uterus

Christopher A. Penfold, Thorsten E. Boroviak, M. Schindler, 2021, Communications biology.

A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves

Christopher A. Penfold, Claire Hill, Emma J. Cooke, 2013, The Plant journal : for cell and molecular biology.

Comparative transcriptome analysis in Arabidopsis ein2/ore3 and ahk3/ore12 mutants during dark-induced leaf senescence

Christopher A. Penfold, V. Buchanan-Wollaston, H. Nam, 2018, Journal of experimental botany.

Time series transcriptomics reveals a BBX32-directed control of acclimation to high light in mature Arabidopsis leaves.

Christopher A. Penfold, T. Lawson, D. Wild, 2021, The Plant journal : for cell and molecular biology.

Time series transcriptomics reveals a BBX32-directed control of dynamic acclimation to high light in mature Arabidopsis leaves

Christopher A. Penfold, T. Lawson, D. Wild, 2020, bioRxiv.

Time series transcriptomics reveals a BBX 32-directed control of 1 dynamic acclimation to high light in mature Arabidopsis leaves 2 Running Title : The regulation of dynamic acclimation in Arabidopsis 3

Christopher A. Penfold, T. Lawson, D. Wild, 2020 .

Epigenetic resetting in the human germ line entails histone modification remodeling

Christopher A. Penfold, M. Surani, S. Dietmann, 2023, Science advances.

Inferring Gene Regulatory Networks from Multiple Datasets.

Christopher A. Penfold, Christopher A Penfold, David L Wild, 2018, Methods in molecular biology.

Spatial profiling of early primate gastrulation in utero

Christopher A. Penfold, W. Reik, F. Hollfelder, 2022, Nature.

How to infer gene networks from expression profiles, revisited

Christopher A. Penfold, Christopher A Penfold, David L Wild, 2011, Interface Focus.

Time-series transcriptomics reveals that AGAMOUS-LIKE 22 affects 3 primary metabolism and developmental processes in drought-stressed 4 Arabidopsis 5 6 Running title : Temporal drought dynamics in Arabidopsis 7 8

Christopher A. Penfold, Dafyd J. Jenkins, T. Lawson, 2016 .

ArabidopsisDefense againstBotrytis cinerea: Chronology and Regulation Deciphered by High-Resolution Temporal Transcriptomic AnalysisC

Christopher A. Penfold, Emma J. Cooke, Dafyd J. Jenkins, 2013 .

CSI: a nonparametric Bayesian approach to network inference from multiple perturbed time series gene expression data

Christopher A. Penfold, Paul E. Brown, Christopher A Penfold, 2015, Statistical applications in genetics and molecular biology.

Transcriptional Dynamics Driving MAMP-Triggered Immunity and Pathogen Effector-Mediated Immunosuppression in Arabidopsis Leaves Following Infection with Pseudomonas syringae pv tomato DC3000[OPEN]

Christopher A. Penfold, Dafyd J. Jenkins, George R. Littlejohn, 2015, Plant Cell.

High-Resolution Temporal Profiling of Transcripts during Arabidopsis Leaf Senescence Reveals a Distinct Chronology of Processes and Regulation[C][W][OA]

Christopher A. Penfold, Dafyd J. Jenkins, D. Wild, 2011, Plant Cell.

Edinburgh Research Explorer Transcriptional dynamics driving MAMP-triggered immunity and pathogen effector-mediated immunosuppression in Arabidopsis leaves following infection with Pseudomonas syringae pv tomato DC3000

Christopher A. Penfold, Dafyd J. Jenkins, George R. Littlejohn, 2018 .

Nonparametric Bayesian inference of transcriptional branching and recombination identifies regulators of early human germ cell development

Christopher A. Penfold, John E. Reid, Zoubin Ghahramani, 2017 .

Nuclear transfer system for the direct induction of embryonic transcripts from intra- and cross-species nuclei using mouse 4-cell embryos

Christopher A. Penfold, Junko Tomikawa, Kei Miyamoto, 2022, STAR protocols.