Shishir K. Gupta

发表

A Novel Algorithm to Design an Efficient siRNA by Combining the Pre Proposed Rules of siRNA Designing

Bashir A. Akhoon, Shailendra K. Gupta, Shishir K. Gupta, 2010 .

Mining Medical Data using SQL Queries and Contingency Tables

Shishir K. Gupta, Jan Zytkow, 2001 .

Bioinformatics Tools for Interpretation of Data Used in Molecular Identification

Krishna Pal Singh, Suchi Smita, Bashir A. Akhoon, 2013 .

Improving Re-annotation of Annotated Eukaryotic Genomes

Johannes Balkenhol, Shishir K. Gupta, Thomas Dandekar, 2016 .

Methods to Identify Evolutionary Conserved Regulatory Elements Using Molecular Phylogenetics in Microbes

Shishir K. Gupta, S. Gupta, Suchi Smita, 2016 .

Scrutinizing the immune defence inventory of Camponotus floridanus applying total transcriptome sequencing

Shishir K. Gupta, T. Dandekar, R. Gross, 2015, BMC Genomics.

Systematic Identification of Anti-Fungal Drug Targets by a Metabolic Network Approach

Nir Osherov, Chunguang Liang, Zohar Meir, 2016, Front. Mol. Biosci..

Identification of Antifungal Targets Based on Computer Modeling

Shishir K. Gupta, T. Dandekar, E. Bencurova, 2018, Journal of fungi.

Identification of immunogenic consensus T-cell epitopes in globally distributed influenza-A H1N1 neuraminidase.

Shishir K. Gupta, O. Wolkenhauer, U. Schmitz, 2011, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Canine Parvovirus Type 2a (CPV-2a)-Induced Apoptosis in MDCK Involves Both Extrinsic and Intrinsic Pathways

Shishir K. Gupta, R. Kumar, S. Saxena, 2013, Applied Biochemistry and Biotechnology.

Understanding the Mechanism of Atovaquone Drug Resistance in Plasmodium falciparum Cytochrome b Mutation Y268S Using Computational Methods

Shishir K. Gupta, K. Singh, S. Gupta, 2014, PloS one.

Genome-wide inference of the Camponotus floridanus protein-protein interaction network using homologous mapping and interacting domain profile pairs

Shishir K. Gupta, T. Dandekar, M. Srivastava, 2020, Scientific Reports.

Designing and Modeling of Complex DNA Vaccine Based on Tropomyosin Protein of Boophilus Genus Tick

Shishir K. Gupta, K. Ghorban, A. Sazmand, 2014, Applied Biochemistry and Biotechnology.

Aspergillus fumigatus versus Genus Aspergillus: Conservation, Adaptive Evolution and Specific Virulence Genes

Shishir K. Gupta, T. Dandekar, Zhuofei Xu, 2020, bioRxiv.

Sequence-based approach for rapid identification of cross-clade CD8+ T-cell vaccine candidates from all high-risk HPV strains

Shishir K. Gupta, K. Singh, S. Gupta, 2016, 3 Biotech.

Canine parvovirus NS1 induced apoptosis involves mitochondria, accumulation of reactive oxygen species and activation of caspases.

Shishir K. Gupta, A. Sahoo, A. Tiwari, 2016, Virus research.

In silico accelerated identification of structurally conserved CD8+ and CD4+ T-cell epitopes in high-risk HPV types.

Shishir K. Gupta, N. Grabe, S. Gupta, 2012, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Aspergillus fumigatus Challenged by Human Dendritic Cells: Metabolic and Regulatory Pathway Responses Testify a Tight Battle

Shishir K. Gupta, T. Dandekar, E. Bencurova, 2019, Front. Cell. Infect. Microbiol..

In silico proteomic characterization of human epidermal growth factor receptor 2 (HER-2) for the mapping of high affinity antigenic determinants against breast cancer

Shishir K. Gupta, Sujata Sharma, B. A. Akhoon, 2012, Amino Acids.

Development of dog mammary tumor xenograft in immunosuppressed Swiss albino mice.

Shishir K. Gupta, S. Saxena, A. Sahoo, 2014, Indian journal of experimental biology.

A Retrospective Analysis of the Demographics, Treatment, and Survival Outcomes of Patients with Desmoplastic Nodular Medulloblastoma Using the Surveillance, Epidemiology, and End Results (SEER) Database

Shishir K. Gupta, J. Gendreau, Mickey E. Abraham, 2020, Cureus.

Bioinformatics in Leishmania Drug Design

Shishir K. Gupta, T. Dandekar, 2018 .

MMP-7 derived peptides with MHC class-I binding motifs from canine mammary tumor tissue elicit strong antigen-specific T-cell responses in BALB/c mice

Brijesh Singh Yadav, Shishir K. Gupta, Dinesh Kumar, 2020, Molecular and cellular biochemistry.

Poly (I:C) enhances the anti-tumor activity of canine parvovirus NS1 protein by inducing a potent anti-tumor immune response

Shishir K. Gupta, A. Sahoo, A. Tiwari, 2016, Tumor Biology.

Viral genes as oncolytic agents for cancer therapy

Shishir K. Gupta, A. Sahoo, A. Tiwari, 2014, Cellular and Molecular Life Sciences.

Prediction and validation of host-pathogen interactions by a versatile inference approach using Aspergillus fumigatus as a case study

Shishir K. Gupta, T. Dandekar, E. Bencurova, 2022, Computational and structural biotechnology journal.

Role of the Pangolin in Origin of SARS-CoV-2: An Evolutionary Perspective

Shishir K. Gupta, T. Dandekar, M. Srivastava, 2022, International journal of molecular sciences.

Development of resistance against blackleg disease in Brassica oleracea var. botrytis through in silico methods.

Shishir K. Gupta, S. Gupta, B. A. Akhoon, 2010, Fungal genetics and biology : FG & B.

Delay in antibiotic therapy results in fatal disease outcome in murine pneumococcal pneumonia

Shishir K. Gupta, A. Gruber, N. Suttorp, 2018, Critical Care.

Protein network analysis indicates that Ebola virus, Neisseria meningitidis and Trypanosoma brucei trigger common host defense response pathways

Shishir K. Gupta, T. Dandekar, E. Bencurova, 2019 .

Omics and bioinformatics applied to vaccine development against Borrelia.

Shishir K. Gupta, T. Dandekar, M. Bhide, 2018, Molecular omics.

Structure prediction and binding sites analysis of curcin protein of Jatropha curcas using computational approaches

Shishir K. Gupta, Nandita Singh, P. Abhilash, 2012, Journal of Molecular Modeling.

Genome-wide scan for potential CD4+ T-cell vaccine candidates in Candida auris by exploiting reverse vaccinology and evolutionary information

Shishir K. Gupta, T. Dandekar, E. Bencurova, 2022, Frontiers in Medicine.

Dissecting the genome, secretome, and effectome repertoires of Monilinia spp.: The causal agent of brown rot disease: A comparative analysis

Shishir K. Gupta, B. A. Akhoon, M. Dhar, 2023, Postharvest Biology and Technology.

Genetically Modified Crops: An Alternative Source of Livestock Feeding

Shishir K. Gupta, R. Deb, S. Chakraborty, 2016 .

Viral genes as oncolytic agents for cancer therapy

Shishir K. Gupta, A. Tiwari, R. Gandham, 2015, Cellular and Molecular Life Sciences.

Interaction of C60 fullerene with the proteins involved in DNA mismatch repair pathway.

Shishir K. Gupta, A. Pandey, A. Dhawan, 2011, Journal of biomedical nanotechnology.

IL-18 immunoadjuvanted xenogeneic canine MMP-7 DNA vaccine overcomes immune tolerance and supresses the growth of murine mammary tumor.

Brijesh Singh Yadav, Shishir K. Gupta, Dinesh Kumar, 2020, International immunopharmacology.

HN protein of Newcastle disease virus sensitizes HeLa cells to TNF-α-induced apoptosis by downregulating NF-κB expression

Shishir K. Gupta, A. Sahoo, A. Tiwari, 2016, Archives of Virology.

Development and evaluation of a Salmonella typhimurium flagellin based chimeric DNA vaccine against infectious bursal disease of poultry.

Shishir K. Gupta, R. Deb, N. Kamble, 2015, Research in veterinary science.

Toll-like receptor-based adjuvants: enhancing the immune response to vaccines against infectious diseases of chicken

Shishir K. Gupta, R. Deb, S. Dey, 2014, Expert review of vaccines.

Sensorineural Hearing Loss in Adults: Etiological Study

Shishir K. Gupta, S. Bist, S. Varshney, 2017 .

Scrutinizing the immune defence inventory of Camponotus floridanus applying total transcriptome sequencing

Shishir K. Gupta, T. Dandekar, R. Gross, 2015, BMC Genomics.

In silico identification of novel protective VSG antigens expressed by Trypanosoma brucei and an effort for designing a highly immunogenic DNA vaccine using IL-12 as adjuvant.

Shishir K. Gupta, B. A. Akhoon, P. Slathia, 2011, Microbial pathogenesis.

Administration of IκB‐kinase inhibitor PS1145 enhances apoptosis in DMBA‐induced tumor in male Wistar rats

Shishir K. Gupta, R. Kumar, S. Saxena, 2015, Cell biology international.

An antibiotic target ranking and prioritization pipeline combining sequence, structure and network-based approaches exemplified for Serratia marcescens.

Thomas Dandekar, Shishir K. Gupta, Roy Gross, 2016, Gene.

C. elegans protein interaction network analysis probes RNAi validated pro-longevity effect of nhr-6, a human homolog of tumor suppressor Nr4a1

Shishir K. Gupta, T. Dandekar, B. A. Akhoon, 2019, Scientific Reports.

Comparative screening of single nucleotide polymorphisms in β-casein and κ-casein gene in different livestock breeds of India

Shishir K. Gupta, N. Gupta, S. Gupta, 2015, Meta gene.

Versatile roles of the chaperonin GroEL in microorganism-insect interactions.

Shishir K. Gupta, R. Gross, H. Feldhaar, 2014, FEMS microbiology letters.

Alveolar Regeneration in COVID-19 Patients: A Network Perspective

Shishir K. Gupta, T. Dandekar, M. Srivastava, 2021, International journal of molecular sciences.

A Staphylococcus aureus Proteome Overview: Shared and Specific Proteins and Protein Complexes from Representative Strains of All Three Clades

Shishir K. Gupta, T. Dandekar, Chunguang Liang, 2016, Proteomes.

Recombinant Bivalent Fusion Protein rVE Induces CD4+ and CD8+ T-Cell Mediated Memory Immune Response for Protection Against Yersinia enterocolitica Infection

Shishir K. Gupta, J. Kingston, A. Singh, 2015, Front. Microbiol..

Computational analysis and modeling the effectiveness of 'Zanamivir' targeting neuraminidase protein in pandemic H1N1 strains.

Shishir K. Gupta, O. Wolkenhauer, U. Schmitz, 2011, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Flagellin A Toll-Like Receptor 5 Agonist as an Adjuvant in Chicken Vaccines

Shishir K. Gupta, R. Deb, S. Dey, 2014, Clinical and Vaccine Immunology.

HN Protein of Newcastle Disease Virus Induces Apoptosis Through SAPK/JNK Pathway

Shishir K. Gupta, R. Kumar, S. Saxena, 2015, Applied Biochemistry and Biotechnology.

In-vitro Characterization and Evaluation of Apoptotic Potential of Bicistronic Plasmid Encoding HN Gene of Newcastle Disease Virus and Human TNF-α

Shishir K. Gupta, R. Kumar, G. Ravi Kumar, 2015, Animal biotechnology.

Recombinant flagellin and its cross-talk with lipopolysaccharide--effect on pooled chicken peripheral blood mononuclear cells.

Shishir K. Gupta, R. Deb, S. Dey, 2013, Research in veterinary science.

Molecular cloning, expression and characterization of rat tumor necrosis factor-α as potent anti-tumor candidate

Shishir K. Gupta, R. Kumar, S. Saxena, 2017 .

Sesquiterpenoids isolated from davana (Artemisia pallens Wall. ex DC) mitigates parkinsonism in Caenorhabditis elegans disease model.

Shishir K. Gupta, Swati Singh, R. Verma, 2022, Biochemical and biophysical research communications.