Augustin Luna

发表

Erratum: The BioPAX community standard for pathway data sharing (Nat. Biotechnol. (2010) 28 (935-942)

Gary D. Bader, Frank Schacherer, Edgar Wingender, 2010 .

Abstract 1284: How can you interpret gene lists from -omics experiments

Gary D. Bader, Chris Sander, Gary D Bader, 2018, Bioinformatics and Systems Biology.

Predicted Role of NAD Utilization in the Control of Circadian Rhythms during DNA Damage Response

Augustin Luna, Mirit I. Aladjem, Geoffrey B. McFadden, 2015, PLoS Comput. Biol..

A formal MIM specification and tools for the common exchange of MIM diagrams: an XML-Based format, an API, and a validation method

Ruth Nussinov, Augustin Luna, Mirit I. Aladjem, 2011, BMC Bioinformatics.

Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2

Nicolas Le Novère, Falk Schreiber, Emek Demir, 2015, Journal of integrative bioinformatics.

rcellminer: exploring molecular profiles and drug response of the NCI-60 cell lines in R

Chris Sander, Augustin Luna, Sudhir Varma, 2016, Bioinform..

PaxtoolsR: pathway analysis in R using Pathway Commons

Chris Sander, Emek Demir, Augustin Luna, 2015, bioRxiv.

Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0

Jacob Beal, Robert Sidney Cox, James McLaughlin, 2018, J. Integr. Bioinform..

MIMTool: A Tool for Drawing Molecular Interaction Maps pdf

Ruth Nussinov, Can C. Özturan, Augustin Luna, 2014, ArXiv.

How can you interpret gene lists from -omics experiments?

Gary D. Bader, Chris Sander, Gary D Bader, 2017 .

PathVisio-MIM: PathVisio plugin for creating and editing Molecular Interaction Maps (MIMs)

Augustin Luna, Martijn P. van Iersel, Mirit I. Aladjem, 2011, Bioinform..

BioPAX – A community standard for pathway data sharing

Kei-Hoi Cheung, Frank Schacherer, Edgar Wingender, 2010, Nature Biotechnology.

Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2

Nicolas Le Novère, Falk Schreiber, Emek Demir, 2015, J. Integr. Bioinform..

snp.plotter: an R-based SNP/haplotype association and linkage disequilibrium plotting package

Augustin Luna, Kristin K. Nicodemus, K. Nicodemus, 2007, Bioinform..

Software support for SBGN maps: SBGN-ML and LibSBGN

Yukiko Matsuoka, Hiroaki Kitano, Nicolas Le Novère, 2012, Bioinform..

Erratum: The Systems Biology Graphical Notation

Samik Ghosh, Yukiko Matsuoka, Hiroaki Kitano, 2009, Nature Biotechnology.

PathVisio-Faceted Search: an exploration tool for multi-dimensional navigation of large pathways

Augustin Luna, Martijn P. van Iersel, Mirit I. Aladjem, 2013, Bioinform..

Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2.

Falk Schreiber, Emek Demir, Augustin Luna, 2015, Journal of integrative bioinformatics.

Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0

Ugur Dogrusoz, Andreas Dräger, Emek Demir, 2019, J. Integr. Bioinform..

PathVisio-Validator: a rule-based validation plugin for graphical pathway notations

Augustin Luna, Martijn P. van Iersel, Mirit I. Aladjem, 2012, Bioinform..

AlignmentViewer: Sequence Analysis of Large Protein Families

Chris Sander, Augustin Luna, Roc Reguant, 2018 .

Causal interactions from proteomic profiles: Molecular data meet pathway knowledge

Chris Sander, Ugur Dogrusoz, Paul T. Spellman, 2021, Patterns.

CellMiner Cross-Database (CellMinerCDB) version 1.2: Exploration of patient-derived cancer cell line pharmacogenomics

Chris Sander, Augustin Luna, Mirit I. Aladjem, 2020, Nucleic Acids Res..

A pancancer survey of cell line - tumor similarity by feature-weighted genomic profiles

Augustin Luna, Nikolaus Schultz, Rileen Sinha, 2021 .

Synthetic biology open language visual (SBOL Visual) version 2.3

Jacob Beal, Matthew R. Pocock, Robert Sidney Cox, 2021, J. Integr. Bioinform..

Erratum: The BioPAX community standard for pathway data sharing (Nat. Biotechnol. (2010) 28 (935-942)

Kei-Hoi Cheung, Frank Schacherer, Edgar Wingender, 2010 .

An Integrated Metabolic Atlas of Clear Cell Renal Cell Carcinoma.

Chris Sander, Augustin Luna, Ed Reznik, 2016, Cancer cell.

Interpretable Machine Learning for Perturbation Biology

Debora S. Marks, Chris Sander, Augustin Luna, 2019, bioRxiv.

Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context

Clement Adebamowo, Ritika Kundra, Steven J. M. Jones, 2018, Cell reports.

Abstract 3302: The molecular landscape of oncogenic signaling pathways in The Cancer Genome Atlas

Ritika Kundra, Chris Sander, Ugur Dogrusoz, 2018, Bioinformatics and Systems Biology.

Pathway Commons 2019 Update: integration, analysis and exploration of pathway data

Chris Sander, Gary D Bader, Ugur Dogrusoz, 2019, Nucleic Acids Res..

Gene Expression Profiles of the NCI-60 Human Tumor Cell Lines Define Molecular Interaction Networks Governing Cell Migration Processes

Augustin Luna, Margot Sunshine, Kurt W. Kohn, 2012, PloS one.

The BioPAX community standard for pathway data sharing (Nature Biotechnology (2010) 28, (935-942))

Kei-Hoi Cheung, Gary D. Bader, Frank Schacherer, 2012 .

Causal interactions from proteomic profiles: molecular data meets pathway knowledge

Chris Sander, Ugur Dogrusoz, Emek Demir, 2018, bioRxiv.

Synthetic biology open language visual (SBOL visual) version 2.2

Jacob Beal, Matthew R. Pocock, Robert Sidney Cox, 2020, J. Integr. Bioinform..