Susumu Goto

Larry Kerschberg, Susumu Goto, Ross A. Overbeek, 1998, Proceedings. Tenth International Conference on Scientific and Statistical Database Management (Cat. No.98TB100243).

Direct-Interaction Approximation - Principles andApplications

Susumu Goto, 1999 .

Supervised de novo reconstruction of metabolic pathways from metabolome-scale compound sets

Yasuo Tabei, Yoshihiro Yamanishi, Susumu Goto, 2013, Bioinform..

BioPAX – A community standard for pathway data sharing

Kei-Hoi Cheung, Frank Schacherer, Edgar Wingender, 2010, Nature Biotechnology.

Fast and accurate database homology search using upper bounds of local alignment scores

Tatsuya Akutsu, Susumu Goto, Minoru Kanehisa, 2005, Bioinform..

Identification of Enzyme Genes Using Chemical Structure Alignments of Substrate-Product Pairs

Susumu Goto, Yuki Moriya, Shujiro Okuda, 2016, J. Chem. Inf. Model..

Network-Based Analysis and Characterization of Adverse Drug-Drug Interactions

Susumu Goto, Masaaki Kotera, Minoru Kanehisa, 2011, J. Chem. Inf. Model..

Extraction of phylogenetic network modules from the metabolic network

Susumu Goto, Minoru Kanehisa, Takuji Yamada, 2006, BMC Bioinformatics.

Object-Oriented Database with Rule-Based Query Interface for Genomic Computation

Toshihisa Takagi, Susumu Goto, Norihiro Sakamoto, 1993, DASFAA.

jPOST: Development of Re-analysis Protocol

Masaki Matsumoto, Susumu Goto, Yuki Moriya, 2016 .

KCF-S: KEGG Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics

Yasuo Tabei, Yoshihiro Yamanishi, Susumu Goto, 2013, BMC Systems Biology.

KEGG bioinformatics resource for plant genomics research.

Susumu Goto, Minoru Kanehisa, Ali Masoudi-Nejad, 2007, Methods in molecular biology.

LIGAND: database of chemical compounds and reactions in biological pathways

Susumu Goto, Masahiro Hattori, Takaaki Nishioka, 2002, Nucleic Acids Res..

KEGG for representation and analysis of molecular networks involving diseases and drugs

Susumu Goto, Minoru Kanehisa, Miho Furumichi, 2009, Nucleic Acids Res..

Weather forecasting : the next generation : the potential use and implementation of ensemble forecasting

Susumu Goto, S. Goto, 2007 .

Introduction to bioinformatics. 3. Present state of integrated database.

Susumu Goto, S. Goto, 1998 .

Prediction of glycan structures from gene expression data based on glycosyltransferase reactions

Susumu Goto, Minoru Kanehisa, Shin Kawano, 2005, Bioinform..

Characterizing common substructures of ligands for GPCR protein subfamilies.

Susumu Goto, Minoru Kanehisa, Masahiro Hattori, 2010, Genome informatics. International Conference on Genome Informatics.

KEGG for integration and interpretation of large-scale molecular data sets

Susumu Goto, Minoru Kanehisa, Miho Furumichi, 2011, Nucleic Acids Res..

The KEGG resource for deciphering the genome

Susumu Goto, Minoru Kanehisa, Masahiro Hattori, 2004, Nucleic Acids Res..

Regulation of metabolic networks by small molecule metabolites

Susumu Goto, Minoru Kanehisa, Alex Gutteridge, 2007, BMC Bioinformatics.

Transferring Reservoir Computing: Formulation and Application to Fluid Physics

Susumu Goto, Masanobu Inubushi, 2019, ICANN.

Inferring protein domains associated with drug side effects based on drug-target interaction network

Yasuo Tabei, Yoshihiro Yamanishi, Susumu Goto, 2013, BMC Systems Biology.

KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains

Tatsuya Akutsu, Kiyoko F. Aoki-Kinoshita, Atsuko Yamaguchi, 2004, Nucleic Acids Res..

E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs

Yoshihiro Yamanishi, Susumu Goto, Masaaki Kotera, 2009, Bioinform..

Generalized reaction patterns for prediction of unknown enzymatic reactions.

Susumu Goto, Minoru Kanehisa, Masahiro Hattori, 2008, Genome informatics. International Conference on Genome Informatics.

KEGG for linking genomes to life and the environment

Yoshihiro Yamanishi, Susumu Goto, Minoru Kanehisa, 2007, Nucleic Acids Res..

KEGG/EXPRESSION: A Database for Browsing and Analysing Microarray Expression Data

Satoshi Miyazaki, Susumu Goto, Minoru Kanehisa, 2000 .

jPOSTrepo: an international standard data repository for proteomes

Masaki Matsumoto, Susumu Goto, Yuki Moriya, 2016, Nucleic Acids Res..

SIMCOMP/SUBCOMP: chemical structure search servers for network analyses

Susumu Goto, Minoru Kanehisa, Masahiro Hattori, 2010, Nucleic Acids Res..

KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold

Susumu Goto, Hiroyuki Ogata, Minoru Kanehisa, 2019, Bioinformatics.

Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach

Susumu Goto, Minoru Kanehisa, Masashi Fujita, 2007, BMC Bioinformatics.

KEGG Atlas mapping for global analysis of metabolic pathways

Peer Bork, Susumu Goto, Minoru Kanehisa, 2008, Nucleic Acids Res..

Discriminating the reaction types of plant type III polyketide synthases

Hiroyuki Ogata, Susumu Goto, Yugo Shimizu, 2017, Bioinform..

Relating drug–protein interaction network with drug side effects

Yoshihiro Yamanishi, Susumu Goto, Edouard Pauwels, 2012, Bioinform..

PIERO ontology for analysis of biochemical transformations: Effective implementation of reaction information in the IUBMB enzyme list

Yosuke Nishimura, Susumu Goto, Masaaki Kotera, 2014, J. Bioinform. Comput. Biol..

KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters

Yoshihiro Yamanishi, Susumu Goto, Yuki Moriya, 2012, Nucleic Acids Res..

Extraction of a Thermodynamic Property for Biochemical Reactions in the Metabolic Pathway

Shunsuke Uemura, Susumu Goto, Minoru Kanehisa, 2003 .

The jPOST environment: an integrated proteomics data repository and database

Masaki Matsumoto, Satoshi Tanaka, Susumu Goto, 2018, Nucleic Acids Res..

EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments

Masanori Suzuki, Ali Masoudi-Nejad, Susumu Goto, 2006, Nucleic Acids Res..

varDB: a pathogen-specific sequence database of protein families involved in antigenic variation

Susumu Goto, Minoru Kanehisa, Nicolas Joannin, 2008, Bioinform..

KEGG: Kyoto Encyclopedia of Genes and Genomes

Susumu Goto, Minoru Kanehisa, M. Kanehisa, 2000, Nucleic Acids Res..

GeneRegionScan: a Bioconductor package for probe-level analysis of specific, small regions of the genome

Susumu Goto, Jesper Z. Haeggström, Per Eriksson, 2009, Bioinform..

jPOST project for proteomics data and analysis tools

Masaki Matsumoto, Satoshi Tanaka, Susumu Goto, 2018 .

Extraction of Correlated Gene Clusters from Multiple Graph Structures: Application

Susumu Goto, Minoru Kanehisa, Shuichi Kawashima, 2000 .

Metabolome-scale prediction of intermediate compounds in multistep metabolic pathways with a recursive supervised approach

Yasuo Tabei, Yoshihiro Yamanishi, Susumu Goto, 2014, Bioinform..

MAPLE 2.3.0: an improved system for evaluating the functionomes of genomes and metagenomes

Susumu Goto, Yuki Moriya, Kazuhiro Takemoto, 2018, Bioscience, biotechnology, and biochemistry.

Erratum: The BioPAX community standard for pathway data sharing (Nat. Biotechnol. (2010) 28 (935-942)

Kei-Hoi Cheung, Frank Schacherer, Edgar Wingender, 2010 .

Analysis of protein interaction networks in neurodegenerative disorders

Susumu Goto, Minoru Kanehisa, Vachiranee Limviphuvadh, 2005 .

Extraction of phylogenetic network modules from prokayrote metabolic pathways.

Susumu Goto, Minoru Kanehisa, Takuji Yamada, 2004, Genome informatics. International Conference on Genome Informatics.

Metabolic pathway reconstruction strategies for central metabolism and natural product biosynthesis

Susumu Goto, Masaaki Kotera, S. Goto, 2016, Biophysics and physicobiology.

Network analysis identifies a putative role for the PPAR and type 1 interferon pathways in glucocorticoid actions in asthmatics

Susumu Goto, Åsa M Wheelock, Craig E Wheelock, 2012, BMC Medical Genomics.

Type III Polyketide Synthases: Functional Classification and Phylogenomics

Susumu Goto, Hiroyuki Ogata, Yugo Shimizu, 2017, Chembiochem : a European journal of chemical biology.

Comprehensive Analysis of Delay in Transcriptional Regulation Using Expression Profiles

Yoshihiro Yamanishi, Susumu Goto, Minoru Kanehisa, 2003 .

EGENES: Transcriptome-Based Plant Database of Genes with Metabolic Pathway Information and Expressed Sequence Tag Indices in KEGG1[C][W][OA]

Ali Masoudi-Nejad, Susumu Goto, Yuki Moriya, 2007, Plant Physiology.

LinkDB: A Database of Cross Links between Molecular Biology Databases

Susumu Goto, Yutaka Akiyama, S. Goto, 1997 .

KEGG and GenomeNet Resources for Predicting Protein Function from Omics Data Including KEGG PLANT Resource

Susumu Goto, Masaaki Kotera, Minoru Kanehisa, 2011 .

Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli

Susumu Goto, Minoru Kanehisa, Shujiro Okuda, 2007, BMC Genomics.

LIGAND Chemical Database for Enzymatic Reactions:A Link between enzyme structures and chemical reactions

Susumu Goto, Minoru Kanehisa, Yutaka Akiyama, 1995 .

Linking Virus Genomes with Host Taxonomy

Susumu Goto, Genki Yoshikawa, Pascal Hingamp, 2016, Viruses.

Extraction of leukemia specific glycan motifs in humans by computational glycomics.

Yoshihiro Yamanishi, Susumu Goto, Minoru Kanehisa, 2005, Carbohydrate research.

Comprehensive analysis of glycosyltransferases in eukaryotic genomes for structural and functional characterization of glycans.

Susumu Goto, Minoru Kanehisa, Shujiro Okuda, 2009, Carbohydrate research.

Systems biology approaches and pathway tools for investigating cardiovascular disease w

Susumu Goto, Minoru Kanehisa, Shuichi Kawashima, 2009 .

Characterization and classification of adverse drug interactions.

Susumu Goto, Masaaki Kotera, Minoru Kanehisa, 2010, Genome informatics. International Conference on Genome Informatics.

Metabolome-scale Prediction of Intermediate Compounds in Multistep Metabolic Pathways with a Recursive Supervised Approach

Susumu Goto, Masaaki Kotera, S. Goto, 2015 .

A global representation of the carbohydrate structures: a tool for the analysis of glycan.

Kiyoko F. Aoki-Kinoshita, Susumu Goto, Minoru Kanehisa, 2005, Genome informatics. International Conference on Genome Informatics.

Clofibrate-induced changes in the liver, heart, brain and white adipose lipid metabolome of Swiss-Webster mice

Susumu Goto, Bruce D. Hammock, John W. Newman, 2007, Metabolomics.

Improvement of the LIGAND Chemical Database

Susumu Goto, Minoru Kanehisa, Masahiro Hattori, 2002 .

Analysis of Binary Relations and Hierarchies of Enzymes in the Metabolic Pathways

Susumu Goto, Minoru Kanehisa, Hidemasa Bono, 1996 .

The BioPAX community standard for pathway data sharing (Nature Biotechnology (2010) 28, (935-942))

Kei-Hoi Cheung, Gary D. Bader, Frank Schacherer, 2012 .

Systems biology approaches and pathway tools for investigating cardiovascular disease.

Susumu Goto, Minoru Kanehisa, Shuichi Kawashima, 2009, Molecular bioSystems.

KEGG as a glycome informatics resource.

Kiyoko F. Aoki-Kinoshita, Susumu Goto, Minoru Kanehisa, 2006, Glycobiology.

Nuclear magnetic resonance metabonomic profiling using tO2PLS.

Dayanthi Nugegoda, Susumu Goto, Timothy Hancock, 2013, Analytica chimica acta.

Environmental Viral Genomes Shed New Light on Virus-Host Interactions in the Ocean

Susumu Goto, Pascal Hingamp, Hiroyuki Ogata, 2017, mSphere.

Enlistment of omics technologies in the fight against malaria: Panacea or Pandora's Box?

Susumu Goto, Mats Wahlgren, Åsa M. Wheelock, 2006 .

Complete Genome Sequence Reconstruction of Amino Acid Biosynthesis Pathways from the References

Susumu Goto, Minoru Kanehisa, Hidemasa Bono, 1998 .