Yuri I Wolf

发表

Malay Kumar Basu, Eugene V Koonin, Emanuel Diego S. Penha, 2019, Proceedings of the National Academy of Sciences.

Reply to Holmes and Duchêne, “Can Sequence Phylogenies Safely Infer the Origin of the Global Virome?”: Deep Phylogenetic Analysis of RNA Viruses Is Highly Challenging but Not Meaningless

Eugene V Koonin, Darius Kazlauskas, Jaime Iranzo, 2019, mBio.

Reply to ‘Evolutionary placement of Methanonatronarchaeia’

Eugene V Koonin, Mark C M van Loosdrecht, Manuel Ferrer, 2019, Nature Microbiology.

Microbial genome analysis: the COG approach

Michael Y. Galperin, Eugene V Koonin, Yuri I Wolf, 2019, Briefings Bioinform..

COG database update: focus on microbial diversity, model organisms, and widespread pathogens

Michael Y. Galperin, Eugene V Koonin, David Landsman, 2020, Nucleic Acids Res..

Eukaryotic large nucleo-cytoplasmic DNA viruses: Clusters of orthologous genes and reconstruction of viral genome evolution

Natalya Yutin, Eugene V Koonin, Yuri I Wolf, 2009, Virology Journal.

Connected gene neighborhoods in prokaryotic genomes.

Eugene V Koonin, Yuri I Wolf, Roman L Tatusov, 2002, Nucleic acids research.

Long intervals of stasis punctuated by bursts of positive selection in the seasonal evolution of influenza A virus

Cecile Viboud, Eugene V Koonin, Yuri I Wolf, 2006, Biology Direct.

The cyanobacterial genome core and the origin of photosynthesis

Michael Y. Galperin, Denis Kaznadzey, Henry Burd, 2006, Proceedings of the National Academy of Sciences.

Purifying and directional selection in overlapping prokaryotic genes.

Eugene V Koonin, I King Jordan, Yuri I Wolf, 2002, Trends in genetics : TIG.

Classification and Nomenclature of CRISPR-Cas Systems: Where from Here?

Eugene V Koonin, Yuri I Wolf, Kira S Makarova, 2018, The CRISPR journal.

Coping with the quantitative genomics 'elephant': the correlation between the gene dispensability and evolution rate.

Yuri I Wolf, Y. Wolf, 2006, Trends in genetics : TIG.

Universal distribution of protein evolution rates as a consequence of protein folding physics

Eugene V Koonin, Yuri I Wolf, E. Koonin, 2010, Proceedings of the National Academy of Sciences.

Interkingdom gene fusions

Eugene V Koonin, Yuri I Wolf, Alexey S Kondrashov, 2000, Genome Biology.

Estimation of prokaryotic supergenome size and composition from gene frequency distributions

Eugene V Koonin, Yuri I Wolf, Alexander E Lobkovsky, 2014, BMC Genomics.

Phylogenomics of Prokaryotic Ribosomal Proteins

Natalya Yutin, Eugene V Koonin, Yuri I Wolf, 2012, Genome Biology.

Evolutionary systems biology: links between gene evolution and function.

Eugene V Koonin, Yuri I Wolf, E. Koonin, 2006, Current opinion in biotechnology.

No evidence of inhibition of horizontal gene transfer by CRISPR–Cas on evolutionary timescales

Eugene V Koonin, Yuri I Wolf, David M Kristensen, 2015, The ISME Journal.

Genome-wide Analysis of Substrate Specificities of the Escherichia coli Haloacid Dehalogenase-like Phosphatase Family*

Liran Carmel, Eugene V Koonin, Hirotada Mori, 2006, Journal of Biological Chemistry.

Differential translation tunes uneven production of operon-encoded proteins.

Rotem Sorek, Eugene V Koonin, Stan J. J. Brouns, 2013, Cell reports.

The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages

Eugene V Koonin, Yuri I Wolf, David J Lipman, 2009, Proceedings of the National Academy of Sciences.

Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer

Natalya Yutin, Eugene V Koonin, Yuri I Wolf, 2012, Biology Direct.

Microevolutionary genomics of bacteria.

Eugene V Koonin, I King Jordan, Yuri I Wolf, 2002, Theoretical population biology.

Evolutionary plasticity of protein families: Coupling between sequence and structure variation

Thomas Madej, Anna R Panchenko, Yuri I Wolf, 2005, Proteins.

Correction: No simple dependence between protein evolution rate and the number of protein-protein interactions: only the most prolific interactors tend to evolve slowly

Eugene V Koonin, I King Jordan, Yuri I Wolf, 2003, BMC Evolutionary Biology.

Discovery and Functional Characterization of Diverse Class 2 CRISPR-Cas Systems.

Eugene V Koonin, Feng Zhang, Konstantin Severinov, 2015, Molecular cell.

Comparative genomics of Thermus thermophilus and Deinococcus radiodurans: divergent routes of adaptation to thermophily and radiation resistance

Eugene V Koonin, Yuri I Wolf, Kira S Makarova, 2005, BMC Evolutionary Biology.

Unifying measures of gene function and evolution

Liran Carmel, Eugene V Koonin, Yuri I Wolf, 2006, Proceedings of the Royal Society B: Biological Sciences.

Phylogenomics of prokaryotic ribosomal proteins

Natalya Yutin, Eugene V Koonin, Yuri I Wolf, 2011, Genome Biology.

Genome reduction as the dominant mode of evolution

Eugene V Koonin, Yuri I Wolf, E. Koonin, 2013, BioEssays : news and reviews in molecular, cellular and developmental biology.

Ecdysozoan clade rejected by genome-wide analysis of rare amino acid replacements.

Liran Carmel, Eugene V Koonin, Yuri I Wolf, 2007, Molecular biology and evolution.

Duplicated genes evolve slower than singletons despite the initial rate increase

Eugene V Koonin, I King Jordan, Yuri I Wolf, 2004, BMC Evolutionary Biology.

Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems

Eugene V Koonin, Yuri I Wolf, Kira S Makarova, 2011, Biology Direct.

The common ancestry of life

Eugene V Koonin, Yuri I Wolf, E. Koonin, 2010, Biology Direct.

Gene family evolution: an in-depth theoretical and simulation analysis of non-linear birth-death-innovation models

Eugene V Koonin, Yuri I Wolf, E. Koonin, 2004, BMC Evolutionary Biology.

Evolvability of an Optimal Recombination Rate

Eugene V Koonin, Yuri I Wolf, E. Koonin, 2015, Genome biology and evolution.

No simple dependence between protein evolution rate and the number of protein-protein interactions: only the most prolific interactors tend to evolve slowly

Eugene V Koonin, I King Jordan, Yuri I Wolf, 2003, BMC Evolutionary Biology.

Genomic determinants of sporulation in Bacilli and Clostridia: towards the minimal set of sporulation-specific genes

Michael Y. Galperin, Daniel J Rigden, Yuri I Wolf, 2012, Environmental microbiology.

The fundamental units, processes and patterns of evolution, and the Tree of Life conundrum

Eugene V Koonin, Yuri I Wolf, E. Koonin, 2009, Biology Direct.

Comparable contributions of structural-functional constraints and expression level to the rate of protein sequence evolution

Eugene V Koonin, Yuri I Wolf, E. Koonin, 2008, Biology Direct.

The basic building blocks and evolution of CRISPR-CAS systems.

Eugene V Koonin, Yuri I Wolf, Kira S Makarova, 2013, Biochemical Society transactions.

Classification and evolution of P-loop GTPases and related ATPases.

Detlef D. Leipe, Eugene V Koonin, Yuri I Wolf, 2002, Journal of molecular biology.

Constant relative rate of protein evolution and detection of functional diversification among bacterial, archaeal and eukaryotic proteins

Eugene V Koonin, I King Jordan, Yuri I Wolf, 2001, Genome Biology.