Ramón Díaz-Uriarte

发表

Gene expression data preprocessing

Joaquín Dopazo, Javier Herrero, Ramón Díaz-Uriarte, 2003, Bioinform..

Pomelo II: finding differentially expressed genes

Ramón Díaz-Uriarte, Edward R. Morrissey, R. Díaz-Uriarte, 2009, Nucleic Acids Res..

ADaCGH2: parallelized analysis of (big) CNA data

Ramón Díaz-Uriarte, 2014, Bioinform..

OncoSimulR: genetic simulation with arbitrary epistasis and mutator genes in asexual populations

Ramón Díaz-Uriarte, R. Díaz-Uriarte, 2017, Bioinform..

Inferring restrictions in the temporal order of mutations during tumor progression: effects of passenger mutations, evolutionary models, and sampling

Ramón Díaz-Uriarte, R. Díaz-Uriarte, 2014, bioRxiv.

Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information

Joaquín Dopazo, Ramón Díaz-Uriarte, Fátima Al-Shahrour, 2005, Bioinform..

FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes

Joaquín Dopazo, Ramón Díaz-Uriarte, Fátima Al-Shahrour, 2004, Bioinform..

A Flexible Statistical Method for Detecting Genomic Copy-Number Changes Using Hidden Markov Models with Reversible Jump MCMC

Ramón Díaz-Uriarte, Oscar M. Rueda, O. Rueda, 2006 .

Using gene ontology on genome-scale studies to find significant associations of biologically relevant terms to groups of genes

Joaquín Dopazo, Ramón Díaz-Uriarte, Javier Herrero, 2003, 2003 IEEE XIII Workshop on Neural Networks for Signal Processing (IEEE Cat. No.03TH8718).

Can we Find Molecular Signatures from Gene Expression Data?

Ramón Díaz-Uriarte, David Casado, R. Díaz-Uriarte, 2004, Spanish Bioinformatics Conference.

Estimating the predictability of cancer evolution

Niko Beerenwinkel, Ramón Díaz-Uriarte, Florian Markowetz, 2019, Bioinform..

PaLS: filtering common literature, biological terms and pathway information

Ramón Díaz-Uriarte, Andreu Alibés, Andrés Cañada, 2008, Nucleic Acids Res..

Asterias: integrated analysis of expression and aCGH data using an open-source, web-based, parallelized software suite

Mariana L. Neves, Ramón Díaz-Uriarte, Edward R. Morrissey, 2007, Nucleic Acids Res..

DNMAD: web-based diagnosis and normalization for microarray data

Joaquín Dopazo, Ramón Díaz-Uriarte, Juan M. Vaquerizas, 2004, Bioinform..

Cancer progression models and fitness landscapes: a many-to-many relationship

Ramón Díaz-Uriarte, R. Díaz-Uriarte, 2017, bioRxiv.

A response to Yu et al. "A forward-backward fragment assembling algorithm for the identification of genomic amplification and deletion breakpoints using high-density single nucleotide polymorphism (SNP) array", BMC Bioinformatics 2007, 8: 145

Ramón Díaz-Uriarte, Oscar M. Rueda, 2007, BMC Bioinformatics.

Supervised Methods with Genomic Data: a Review and Cautionary View

Ramón Díaz-Uriarte, R. Díaz-Uriarte, 2005, Data Analysis and Visualization in Genomics and Proteomics.

GeneSrF and varSelRF: a web-based tool and R package for gene selection and classification using random forest

Ramón Díaz-Uriarte, R. Díaz-Uriarte, 2007, BMC Bioinformatics.

The GEPAS pipeline

Javier Herrero, Ramón Díaz-Uriarte, Fátima Al-Shahrour, 2011 .

Flexible and Accurate Detection of Genomic Copy-Number Changes from aCGH

Ramón Díaz-Uriarte, Oscar M. Rueda, O. Rueda, 2007, PLoS Comput. Biol..

An Approach to Inferring Transcriptional Regulation Among Genes From Large-Scale Expression Data

Joaquín Dopazo, Ramón Díaz-Uriarte, Javier Herrero, 2003, Comparative and functional genomics.

Detection of recurrent copy number alterations in the genome: taking among-subject heterogeneity seriously

Ramón Díaz-Uriarte, Oscar M. Rueda, O. Rueda, 2009, BMC Bioinformatics.

GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data

Joaquín Dopazo, Ramón Díaz-Uriarte, Javier Herrero, 2005, Nucleic Acids Res..

Asterias: A Parallelized Web-based Suite for the Analysis of Expression and aCGH Data

Ramón Díaz-Uriarte, Patricio Yankilevich, Edward R. Morrissey, 2006, Cancer informatics.

GEPAS: a web-based resource for microarray gene expression data analysis

Joaquín Dopazo, Ramón Díaz-Uriarte, Javier Herrero, 2003, Nucleic Acids Res..

SignS: a parallelized, open-source, freely available, web-based tool for gene selection and molecular signatures for survival and censored data

Ramón Díaz-Uriarte, R. Díaz-Uriarte, 2008, BMC Bioinformatics.

RJaCGH: Bayesian analysis of aCGH arrays for detecting copy number changes and recurrent regions

Ramón Díaz-Uriarte, Oscar M. Rueda, O. Rueda, 2009, Bioinform..

Gene selection and classification of microarray data using random forest

Ramón Díaz-Uriarte, Sara Alvarez de Andrés, R. Díaz-Uriarte, 2006, BMC Bioinformatics.

IDconverter and IDClight: Conversion and annotation of gene and protein IDs

Ramón Díaz-Uriarte, Patricio Yankilevich, Andreu Alibés, 2007, BMC Bioinformatics.

New Challenges in Gene Expression Data Analysis and the Extended GEPAS

Joaquín Dopazo, Ramón Díaz-Uriarte, Javier Herrero, 2004, Spanish Bioinformatics Conference.

The Use of Go Terms to Understand the Biological Significance of Microarray Differential Gene Expression Data

Fatima Al-Shahrour, Joaquín Dopazo, Ramón Díaz-Uriarte, 2004 .

TESTING HYPOTHESES OF CORRELATED EVOLUTION USING PHYLOGENETICALLY INDEPENDENT CONTRASTS: SENSITIVITY TO DEVIATIONS FROM BROWNIAN MOTION

Ramón Díaz-Uriarte, Theodore Garland, T. Garland, 1996 .

ADaCGH: A Parallelized Web-Based Application and R Package for the Analysis of aCGH Data

Ramón Díaz-Uriarte, Oscar M. Rueda, O. Rueda, 2007, PloS one.

Finding Recurrent Regions of Copy Number Variation: A Review

Ramón Díaz-Uriarte, Oscar M. Rueda, O. Rueda, 2008 .

Identification of amplified and highly expressed genes in amplicons of the T-cell line huT78 detected by cDNA microarray CGH

Ramón Díaz-Uriarte, Javier Benítez, Marta Cuadros, 2005, Molecular Cancer.

A Bayesian HMM with random effects and an unknown number of states for DNA copy number analysis

Ramón Díaz-Uriarte, Cristina Rueda, Oscar M. Rueda, 2013 .

15 THE USE OF GO TERMS TO UNDERSTAND THE BIOLOGICAL SIGNIFICANCE OF MICROARRAY DIFFERENTIAL GENE EXPRESSION DATA

Joaquín Dopazo, Ramón Díaz-Uriarte, Fátima Al-Shahrour, 2003 .

waviCGH: a web application for the analysis and visualization of genomic copy number alterations

Ramón Díaz-Uriarte, Daniel Rico, David G. Pisano, 2010, Nucleic Acids Res..

Transcription Initiation Activity Sets Replication Origin Efficiency in Mammalian Cells

Ramón Díaz-Uriarte, Derek Huntley, Neil Brockdorff, 2009, PLoS genetics.