Stavros J. Hamodrakas

发表

GeneViTo: Visualizing gene-product functional and structural features in genomic datasets

Georgios S. Vernikos, Christos G. Gkogkas, Vasilis J. Promponas, 2003, BMC Bioinformatics.

gpDB: a database of GPCRs, G-proteins, effectors and their interactions

Stavros J. Hamodrakas, Pantelis G. Bagos, Margarita C. Theodoropoulou, 2008, Bioinform..

A β-solenoid model of the Pmel17 repeat domain: insights to the formation of functional amyloid fibrils

Stavros J. Hamodrakas, Nikolaos N. Louros, Fotis A. Baltoumas, 2016, Journal of Computer-Aided Molecular Design.

CAST: an iterative algorithm for the complexity analysis of sequence tracts

Chris Sander, Anton J. Enright, Sophia Tsoka, 2000, Bioinform..

waveTM: Wavelet-based transmembrane segment prediction

Stavros J. Hamodrakas, Zoi I. Litou, Evanthia E. Pashou, 2004, Silico Biol..

Evaluation of methods for predicting the topology of β-barrel outer membrane proteins and a consensus prediction method

Stavros J. Hamodrakas, Pantelis G. Bagos, Theodore Liakopoulos, 2005, BMC Bioinformatics.

Computational Methods for the Prediction of GPCRs Coupling Selectivity

Stavros J. Hamodrakas, Pantelis G. Bagos, Nikolaos G. Sgourakis, 2009 .

A Hidden Markov Model method, capable of predicting and discriminating β-barrel outer membrane proteins

Stavros J. Hamodrakas, Pantelis G. Bagos, Ioannis C. Spyropoulos, 2004, BMC Bioinformatics.

Evaluation of annotation strategies using an entire genome sequence

Miguel A. Andrade-Navarro, Alfonso Valencia, Anton J. Enright, 2003, Bioinform..

Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins

Stavros J. Hamodrakas, Pantelis G. Bagos, Theodore D. Liakopoulos, 2006, BMC Bioinformatics.

Bioinformatics Original Paper Prediction of the Coupling Specificity of Gpcrs to Four Families of G-proteins Using Hidden Markov Models and Artificial Neural Networks

Stavros J. Hamodrakas, Pantelis G. Bagos, Nikolaos G. Sgourakis, 2022 .

A method for the prediction of GPCRs coupling specificity to G-proteins using refined profile Hidden Markov Models

Stavros J. Hamodrakas, Pantelis G. Bagos, Panagiotis K. Papasaikas, 2005, BMC Bioinformatics.

PBM: a software package to create, display and manipulate interactively models of small molecules and proteins on IBM-compatible PCs

Anastassis Perrakis, Stavros J. Hamodrakas, A. Athanasiades, 1995, Comput. Appl. Biosci..

TMRPres2D: high quality visual representation of transmembrane protein models

Stavros J. Hamodrakas, Pantelis G. Bagos, Ioannis C. Spyropoulos, 2004, Bioinform..

PRED-TMBB: a web server for predicting the topology of ?barrel outer membrane proteins

Stavros J. Hamodrakas, Pantelis G. Bagos, Ioannis C. Spyropoulos, 2004, Nucleic Acids Res..

cuticleDB: a relational database of Arthropod cuticular proteins

Stavros J. Hamodrakas, Ioannis C. Spyropoulos, Vassiliki A. Iconomidou, 2004, BMC Bioinformatics.

CoPreTHi: A Web tool which combines transmembrane protein segment prediction methods

Vasilis J. Promponas, Stavros J. Hamodrakas, G. A. Palaios, 2009, Silico Biol..

gpDB: a database of G-proteins, GPCRs, Effectors and their interactions

Stavros J. Hamodrakas, Pantelis G. Bagos, Margarita C. Theodoropoulou, 2008 .

A web server to locate periodicities in a sequence

Vasilis J. Promponas, Stavros J. Hamodrakas, C. M. Pasquier, 1998, Bioinform..

Faster Gradient Descent Training of Hidden Markov Models, Using Individual Learning Rate Adaptation

Stavros J. Hamodrakas, Pantelis G. Bagos, Theodore Liakopoulos, 2004, ICGI.

Prediction of Cell Wall Sorting Signals in Gram-Positive bacteria with a Hidden Markov Model: Application to Complete genomes

Stavros J. Hamodrakas, Pantelis G. Bagos, Konstantinos D. Tsirigos, 2008, J. Bioinform. Comput. Biol..

Structural characterization and molecular dynamics simulations of the caprine and bovine solute carrier family 11 A1 (SLC11A1)

Stavros J. Hamodrakas, Fotis A. Baltoumas, Kostas A. Triantaphyllopoulos, 2018, Journal of Computer-Aided Molecular Design.

A workbench for computational analysis of protein sequence and structure on the Internet

Vasilis J. Promponas, Stavros J. Hamodrakas, Claude Pasquier, 2000 .

PRED-GPCR: GPCR recognition and family classification server

Vasilis J. Promponas, Stavros J. Hamodrakas, Pantelis G. Bagos, 2004, Nucleic Acids Res..

PRED-TMR2: An hierarchical neural network to classify proteins as transmembrane and a novel method to predict transmembrane segments

Stavros J. Hamodrakas, Claude Pasquier, Giorgos Palaios, 1999 .

PredSL: A Tool for the N-terminal Sequence-based Prediction of Protein Subcellular Localization

Stavros J. Hamodrakas, Pantelis G. Bagos, Zoi I. Litou, 2006, Genom. Proteom. Bioinform..

OMPdb: a database of β-barrel outer membrane proteins from Gram-negative bacteria

Stavros J. Hamodrakas, Pantelis G. Bagos, Konstantinos D. Tsirigos, 2010, Nucleic Acids Res..

CW-PRED: A HMM-Based Method for the Classification of Cell Wall-Anchored Proteins of Gram-Positive Bacteria

Stavros J. Hamodrakas, Pantelis G. Bagos, Konstantinos D. Tsirigos, 2012, SETN.

N-terminal sequence-based prediction of subcellular location

Stavros J. Hamodrakas, Pantelis G. Bagos, Zoi I. Litou, 2005, BMC Bioinformatics.

DAM-BIO: Bioinformatics internet workbench for protein analysis. New modules and applications to biological problems

Spyros G. Tzafestas, Stavros J. Hamodrakas, Claude Pasquier, 2005 .

A protein secondary structure prediction scheme for the IBM PC and compatibles

Stavros J. Hamodrakas, S. Hamodrakas, 1988, Comput. Appl. Biosci..

A web interface for FT: a tool dedicated to the study of periodicities in sequences

Stavros J. Hamodrakas, Claude Pasquier, Vassilis Promponas, 1998 .

mpMoRFsDB: a database of molecular recognition features in membrane proteins

Stavros J. Hamodrakas, Foivos Gypas, Georgios N. Tsaousis, 2013, Bioinform..

Maximum likelihood and conditional maximum likelihood learning algorithms for hidden Markov models with labeled data: application to transmembrane protein topology prediction

Stavros J. Hamodrakas, Pantelis G. Bagos, Th. D. Liakopoulos, 2003 .

Molecular dynamics simulations and structure-based network analysis reveal structural and functional aspects of G-protein coupled receptor dimer interactions

Stavros J. Hamodrakas, Margarita C. Theodoropoulou, Fotis A. Baltoumas, 2016, Journal of Computer-Aided Molecular Design.

Efficient Training of Hidden Markov Models for Protein Sequence Analysis

Stavros J. Hamodrakas, Pantelis G. Bagos, Th. D. Liakopoulos, 2019 .

How Many 3D Structures Do We Need to Train a Predictor?

Stavros J. Hamodrakas, Pantelis G. Bagos, Georgios N. Tsaousis, 2009, Genom. Proteom. Bioinform..

ExTopoDB: a database of experimentally derived topological models of transmembrane proteins

Stavros J. Hamodrakas, Pantelis G. Bagos, Konstantinos D. Tsirigos, 2010, Bioinform..

GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques

Reinhard Schneider, Georgios A. Pavlopoulos, Stavros J. Hamodrakas, 2010, Database J. Biol. Databases Curation.

GPCRpipe: a pipeline for the detection of G-protein coupled receptors in proteomes

Stavros J. Hamodrakas, Pantelis G. Bagos, Zoi I. Litou, 2013 .

A Consensus Method for the Prediction of ‘Aggregation-Prone’ Peptides in Globular Proteins

Stavros J. Hamodrakas, Vassiliki A. Iconomidou, S. Hamodrakas, 2013, PloS one.

Topology prediction of β-barrel outer membrane proteins

Vasilis J. Promponas, Stavros J. Hamodrakas, Pantelis G. Bagos, 2005 .

A novel method for GPCR recognition and family classification, using fingerprints derived from profile Hidden Markov Models

Stavros J. Hamodrakas, Pantelis G. Bagos, Zoi I. Litou, 2003 .

Structural Analysis of Peptide-Analogues of Human Zona Pellucida ZP1 Protein with Amyloidogenic Properties: Insights into Mammalian Zona Pellucida Formation

Stavros J. Hamodrakas, Nikolaos N. Louros, Vassiliki A. Iconomidou, 2013, PloS one.