Steve Hoffmann

发表

BAT: Bisulfite Analysis Toolkit

Helene Kretzmer, Christian Otto, Steve Hoffmann, 2017, F1000Research.

Read mapping

Peter F. Stadler, Steve Hoffmann, P. Stadler, 2016, it Inf. Technol..

Creativity in Configuring Affective Agents for Interactive Storytelling

Steve Hoffmann, Paolo Petta, Stefan Rank, 2012, ICCC.

The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy

Olaf Wolkenhauer, Rolf Backofen, Sebastian Will, 2017, Nucleic Acids Res..

Panel Discussion: Industry's Effort on Waste Minimization andRecycling

Steve Hoffmann, Fred L. Cook, John Conyers, 2003 .

Identification and Classification of Small RNAs in Transcriptome Sequence Data

Peter F. Stadler, Steve Hoffmann, David Langenberger, 2010, Pacific Symposium on Biocomputing.

Classification and Identification of Non-coding RNAs using High Throughput Sequencing Data

Peter F. Stadler, Steve Hoffmann, David Langenberger, 2009 .

Generalized enhanced suffix array construction in external memory

Cristina Dutra de Aguiar Ciferri, Steve Hoffmann, Guilherme P. Telles, 2017, Algorithms for Molecular Biology.

The primary transcriptome of the major human pathogen Helicobacter pylori

Kristin Reiche, Peter F. Stadler, Steve Hoffmann, 2010, Nature.

Exploring Narrative Interpretation and Adaptation for Interactive Story Creation

Steve Hoffmann, Ulrike Spierling, Ulrike Spierling, 2010, ICIDS.

MicroRNA or Not MicroRNA?

Peter F. Stadler, Hakim Tafer, Steve Hoffmann, 2011, BSB.

Tutorial: Introduction to Interactive Story Creation

Nicolas Szilas, Steve Hoffmann, Ulrike Spierling, 2010, ICIDS.

LEED: Sustainability Goes Mainstream

Steve Hoffmann, 2002 .

Fast and sensitive mapping of bisulfite-treated sequencing data

Peter F. Stadler, Steve Hoffmann, Christian Otto, 2012, Bioinform..

Customized workflow development and data modularization concepts for RNA-Sequencing and metatranscriptome experiments.

Olaf Wolkenhauer, Steve Hoffmann, Andrea Bagnacani, 2017, Journal of biotechnology.

DIEGO: detection of differential alternative splicing using Aitchison’s geometry

Stephan H. Bernhart, Steve Hoffmann, Gero Doose, 2017, Bioinform..

DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments

Peter F. Stadler, Steve Hoffmann, David Langenberger, 2011, Nucleic Acids Res..

"Office Brawl": a conversational storytelling game and its creation process

Alexander Schäfer, Steve Hoffmann, Ulrike Spierling, 2011, Advances in Computer Entertainment Technology.

Fast local fragment chaining using sum-of-pair gap costs

Peter F. Stadler, Jan Gorodkin, Steve Hoffmann, 2011, Algorithms for Molecular Biology.

A simple data-adaptive probabilistic variant calling model

Peter F. Stadler, Steve Hoffmann, Korbinian Strimmer, 2015, Algorithms for Molecular Biology.

Genominformatische Verfahren zur Analyse von Daten der Hochdurchsatzsequenzierung

Steve Hoffmann, 2014, Ausgezeichnete Informatikdissertationen.

Lacking alignments? The next-generation sequencing mapper segemehl revisited

Peter F. Stadler, Steve Hoffmann, Christian Otto, 2014, Bioinform..

Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures

Peter F. Stadler, Steve Hoffmann, Christian Otto, 2009, PLoS Comput. Biol..

deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns

Claus Thorn Ekstrøm, Peter F. Stadler, Jan Gorodkin, 2011, Bioinform..

Evidence for human microRNA-offset RNAs in small RNA sequencing data

Peter F. Stadler, Steve Hoffmann, David Langenberger, 2009, Bioinform..

Sequence assembly

Peter F. Stadler, Jan Gorodkin, Steve Hoffmann, 2009, Comput. Biol. Chem..

Workshop: Education in Interactive Digital Storytelling

Nicolas Szilas, Steve Hoffmann, Ulrike Spierling, 2010, ICIDS.

Authoring vs. Configuring Affective Agents for Interactive Storytelling

Simon Mayr, Steve Hoffmann, Paolo Petta, 2014, Appl. Artif. Intell..

How Authors Benefit from Linear Logic in the Authoring Process of Interactive Storyworlds

Steve Hoffmann, Ronan Champagnat, Ulrike Spierling, 2011, ICIDS.

ORFer – retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files

Konrad Büssow, Steve Hoffmann, Volker Sievert, 2002, BMC Bioinformatics.

DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control

Roland Eils, Paul Flicek, Helene Kretzmer, 2015, Nature Genetics.

Traces of post-transcriptional RNA modifications in deep sequencing data

Steve Hoffmann, David Langenberger, Peter F Stadler, 2011, Biological chemistry.

metilene: fast and sensitive calling of differentially methylated regions from bisulfite sequencing data

Helene Kretzmer, Steve Hoffmann, Peter F Stadler, 2016, Genome research.

The African coelacanth genome provides insights into tetrapod evolution

Eric S. Lander, Sonja J. Prohaska, Peter F. Stadler, 2013 .

Evolution of vault RNAs.

Sonja J. Prohaska, Steve Hoffmann, Jörg Hackermüller, 2009, Molecular biology and evolution.

Genomic and transcriptomic heterogeneity of colorectal tumours arising in Lynch syndrome

Steve Hoffmann, Martin Peifer, Markus Loeffler, 2017, The Journal of pathology.

Whither systems medicine?

Ingo Roeder, Olaf Wolkenhauer, Nils Blüthgen, 2018, Experimental & Molecular Medicine.

Dicer-processed small RNAs: rules and exceptions.

Steve Hoffmann, David Langenberger, Peter F Stadler, 2013, Journal of experimental zoology. Part B, Molecular and developmental evolution.

Alu Elements in ANRIL Non-Coding RNA at Chromosome 9p21 Modulate Atherogenic Cell Functions through Trans-Regulation of Gene Networks

Peter F. Stadler, Steve Hoffmann, Markus Scholz, 2013, PLoS genetics.

RNA-seq analysis identifies different transcriptomic types and developmental trajectories of primary melanomas

Steve Hoffmann, Janet Kelso, Michael Hölzel, 2018, Oncogene.