Bingshan Li

发表

DRAMS: A tool to detect and re-align mixed-up samples for integrative studies of multi-omics data

Qiang Wei, Quan Wang, Rui Chen, 2019, bioRxiv.

QPLOT: A Quality Assessment Tool for Next Generation Sequencing Data

Xiaowei Zhan, Paul Anderson, Hyun Min Kang, 2013, BioMed research international.

A haplotype-based framework for group-wise transmission/disequilibrium tests for rare variant association analysis

Wei Chen, Rui Chen, Qiang Wei, 2015, Bioinform..

Clone-array pooled shotgun mapping and sequencing: design and analysis of experiments.

Aleksandar Milosavljevic, Miklós Csürös, Bingshan Li, 2003, Genome informatics. International Conference on Genome Informatics.

Sequence analysis A Bayesian framework for de novo mutation calling in parents-offspring trios

Wei Chen, Yujun Han, Qiang Wei, 2015 .

Ultrasound Image-Based Diagnosis of Cirrhosis with an End-to-End Deep Learning model

Hai Yang, Yang Sun, Ligang Cui, 2020, 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Cancer driver gene discovery through an integrative genomics approach in a non‐parametric Bayesian framework

Hai Yang, Qiang Wei, Xue Zhong, 2016, Bioinform..

A computational method for genotype calling in family-based sequencing data

Wei Chen, Zhou Fang, George C. Tseng, 2016, BMC Bioinformatics.

RVTESTS: an efficient and comprehensive tool for rare variant association analysis using sequence data

Xiaowei Zhan, Gonçalo R. Abecasis, Dajiang J. Liu, 2016, Bioinform..

ASAP: an environment for automated preprocessing of sequencing data

Chun Li, Bingshan Li, Eric S Torstenson, 2012, BMC Research Notes.

Joint detection of copy number variations in parent-offspring trios

Yadong Wang, Jian Liu, Jianguo Lu, 2016, Bioinform..

A gradient-boosting approach for filtering de novo mutations in parent-offspring trios

Yadong Wang, Xiaolin Zhu, Yongzhuang Liu, 2014, Bioinform..

DRAMS: A tool to detect and re-align mixed-up samples for integrative studies of multi-omics data

Yan Xia, Sihan Liu, Chao Chen, 2020, PLoS computational biology.

DDIWAS: High-throughput electronic health record-based screening of drug-drug interactions

Joshua C Denny, Wei-Qi Wei, Dan M Roden, 2021, J. Am. Medical Informatics Assoc..

Transcriptome analysis of psoriasis in a large case-control sample: RNA-seq provides insights into disease mechanisms

Andrew Johnston, Goncalo R. Abecasis, Lam C. Tsoi, 2014, The Journal of investigative dermatology.

A Likelihood-Based Framework for Variant Calling and De Novo Mutation Detection in Families

Wei Chen, Gonçalo R. Abecasis, Carlo Sidore, 2012, PLoS genetics.

A Transcriptome-Wide Association Study Among 97,898 Women to Identify Candidate Susceptibility Genes for Epithelial Ovarian Cancer Risk.

Harvey Risch, Yian A Chen, Mads Thomassen, 2018, Cancer research.

A common TCN1 loss-of-function variant is associated with lower vitamin B12 concentration in African Americans.

Xue Zhong, Qiang Wei, Yun Li, 2018, Blood.

Genome-wide association study in East Asians identifies two novel breast cancer susceptibility loci.

Ying Zheng, Min-Ho Shin, Shoichiro Tsugane, 2016, Human molecular genetics.

Network-based Translation of GWAS Findings to Pathobiology and Drug Repurposing for Alzheimer’s Disease

Yadi Zhou, Feixiong Cheng, Bin Zhang, 2020 .

Associating Multivariate Quantitative Phenotypes with Genetic Variants in Family Samples with a Novel Kernel Machine Regression Method

Wei Chen, Qi Yan, Nianjun Liu, 2015, Genetics.

Network-based stratification analysis of 13 major cancer types using mutations in panels of cancer genes

Yu Shyr, Xue Zhong, Bingshan Li, 2015, BMC Genomics.

Improved Variant Calling Accuracy by Merging Replicates in Whole-Exome Sequencing Studies

Chun Li, Jirong Long, Wei Zheng, 2014, BioMed research international.

Genotype calling and haplotyping in parent-offspring trios

Wei Chen, Yun Li, Hyun Min Kang, 2013, Genome research.

The impact of genotype calling errors on family-based studies

Wei Chen, Qi Yan, Edwin H. Cook, 2016, Scientific Reports.

Learning Opportunities for Drug Repositioning via GWAS and PheWAS Findings

Bingshan Li, Cheng Gao, You Chen, 2018, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

Identifying Rare Variants Associated with Complex Traits via Sequencing

Suzanne M. Leal, Dajiang J. Liu, Bingshan Li, 2013, Current protocols in human genetics.

Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk

Yan Guo, Ben Zhang, Min-Ho Shin, 2014, Nature Genetics.

Discovery of Rare Variants via Sequencing: Implications for the Design of Complex Trait Association Studies

Suzanne M. Leal, Bingshan Li, S. Leal, 2009, PLoS genetics.

Recurrent Tissue-Specific mtDNA Mutations Are Common in Humans

Tricia A. Thornton-Wells, Eric Torstenson, Jonathan L. Haines, 2013, PLoS genetics.

Fine Mapping of Five Loci Associated with Low-Density Lipoprotein Cholesterol Detects Variants That Double the Explained Heritability

Gonçalo R. Abecasis, Anne U. Jackson, Carlo Sidore, 2011, PLoS genetics.