Eric Bonnet

发表

Conceptual and computational framework for logical modelling of biological networks deregulated in diseases

Andrei Zinovyev, Emmanuel Barillot, Arnau Montagud, 2019, Briefings Bioinform..

Prediction of a gene regulatory network linked to prostate cancer from gene expression, microRNA and clinical data

Yves Van de Peer, Tom Michoel, Eric Bonnet, 2010, Bioinform..

OCSANA: optimal combinations of interventions from network analysis

Emmanuel Barillot, Eric Bonnet, Andrei Yu. Zinovyev, 2013, Bioinform..

Scalable hardware accelerator for comparing DNA and protein sequences

Yvan Saeys, Yves Van de Peer, Dirk Stroobandt, 2006, InfoScale '06.

TAPIR, a web server for the prediction of plant microRNA targets, including target mimics

Yves Van de Peer, Ying He, Eric Bonnet, 2010, Bioinform..

Learning Differential Module Networks Across Multiple Experimental Conditions.

Tom Michoel, Eric Bonnet, Pau Erola, 2017, Methods in molecular biology.

BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats

Emmanuel Barillot, Eric Bonnet, Laurence Calzone, 2013, BMC Systems Biology.

Lemon-Tree: Multi-omics module network inference

Tom Michoel, Eric Bonnet, 2012 .

Visualization of High-Throughput Data on Large-Scale BiologicalNetworks

Eric Bonnet, Paul Deveau, 2015 .

A Scalable Hardware Accelerator for Comparing Protein Sequences

Yvan Saeys, Yves Van de Peer, Dirk Stroobandt, 2006 .

Calculating Biological Module Enrichment or Depletion and Visualizing Data on Large-scale Molecular Maps with ACSNMineR and RNaviCell R packages

Andrei Zinovyev, Emmanuel Barillot, Eric Bonnet, 2016, bioRxiv.

Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)

Chris J. Myers, Carole Goble, Dagmar Waltemath, 2011, Standards in Genomic Sciences.

NaviCell Web Service for network-based data visualization

Inna Kuperstein, Emmanuel Barillot, Eric Bonnet, 2015, Nucleic Acids Res..

Calculating Biological Module Enrichment or Depletion and Visualizing Data on Large-scale Molecular Maps with ACSNMineR and RNaviCell Packages

Andrei Zinovyev, Emmanuel Barillot, Eric Bonnet, 2016, The R Journal.

Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences

Yves Van de Peer, Pierre Rouzé, Eric Bonnet, 2004, Bioinform..

650 A Pathway-based Design of Rational Combination Therapies for Cancer

Andrei Zinovyev, Eric Bonnet, Emmanuel Barillot, 2012 .

Integrative Multi-omics Module Network Inference with Lemon-Tree

Tom Michoel, Eric Bonnet, Laurence Calzone, 2014, PLoS Comput. Biol..

RA-map: building a state-of-the-art interactive knowledge base for rheumatoid arthritis

Piotr Gawron, Anna Niarakis, Marek Ostaszewski, 2020, Database J. Biol. Databases Curation.

LeMoNe - Java package for learning module networks from gene expression data.

Tom Michoel, Eric Bonnet, Anagha Joshi, 2009 .

Validating module network learning algorithms using simulated data

Kathleen Marchal, Yvan Saeys, Koenraad Van Leemput, 2007, BMC Bioinformatics.

Using convolutional neural networks for the classification of breast cancer images

Eric Bonnet, 2021 .

A Tandem Affinity Purification-based Technology Platform to Study the Cell Cycle Interactome in Arabidopsis thaliana*S

Eric Bonnet, Kris Laukens, Thomas De Vijlder, 2007, Molecular & Cellular Proteomics.

zt: A Sofware Tool for Simple and Partial Mantel Tests

Yves Van de Peer, Eric Bonnet, Y. Peer, 2002 .

Generic eukaryotic core promoter prediction using structural features of DNA.

Yvan Saeys, Eric Bonnet, Thomas Abeel, 2008, Genome research.

Transcription regulatory networks in Caenorhabditis elegans inferred through reverse-engineering of gene expression profiles constitute biological hypotheses for metazoan development.

Anagha Joshi, Tom Michoel, Eric Bonnet, 2009, Molecular bioSystems.