Peter C. Fineran

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Accurate computational prediction of the transcribed strand of CRISPR non-coding RNAs

Chris M. Brown, Ambarish Biswas, Peter C. Fineran, 2014, Bioinform..

CRISPRDetect: A flexible algorithm to define CRISPR arrays

Chris M. Brown, Ambarish Biswas, Peter C. Fineran, 2016, BMC Genomics.

Function and Regulation of Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) / CRISPR Associated (Cas) Systems

Peter C. Fineran, P. C. Fineran, Corinna Richter, 2012, Viruses.

The Cpf1 CRISPR-Cas protein expands genome-editing tools

Peter C. Fineran, R. Staals, P. C. Fineran, 2015, Genome Biology.

CRISPR-Cas: Adapting to change

Stan J. J. Brouns, Peter C. Fineran, Rebecca E. McKenzie, 2017, Science.

A century of the phage: past, present and future

Peter C. Fineran, G. Salmond, P. C. Fineran, 2015, Nature Reviews Microbiology.

Priming in the Type I-F CRISPR-Cas system triggers strand-independent spacer acquisition, bi-directionally from the primed protospacer

Peter C. Fineran, Rebecca E. McKenzie, R. Staals, 2014, Nucleic acids research.

In Vivo Protein Interactions and Complex Formation in the Pectobacterium atrosepticum Subtype I-F CRISPR/Cas System

Peter C. Fineran, P. C. Fineran, Corinna Richter, 2012, PloS one.

The phage abortive infection system, ToxIN, functions as a protein–RNA toxin–antitoxin pair

Kathryn S. Lilley, Peter C. Fineran, G. Salmond, 2009, Proceedings of the National Academy of Sciences.

Cytotoxic Chromosomal Targeting by CRISPR/Cas Systems Can Reshape Bacterial Genomes and Expel or Remodel Pathogenicity Islands

Peter C. Fineran, P. C. Fineran, R. Przybilski, 2013, PLoS genetics.

Csy4 is responsible for CRISPR RNA processing in Pectobacterium atrosepticum

Peter C. Fineran, P. C. Fineran, R. Przybilski, 2011, RNA biology.

The biosynthesis and regulation of bacterial prodiginines

Finian J. Leeper, Peter C. Fineran, G. Salmond, 2006, Nature Reviews Microbiology.

CRISPR-Cas systems preferentially target the leading regions of MOBF conjugative plasmids

Sarah Neumann, Fernando de la Cruz, Stan J. J. Brouns, 2013, RNA biology.

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

Alexander V. Tyakht, Samuel L. Díaz-Muñoz, Stan J. J. Brouns, 2019, Nature Microbiology.

CRISPR–Cas systems: beyond adaptive immunity

Peter C. Fineran, A. Buckling, E. Westra, 2014, Nature Reviews Microbiology.

Pectobacterium atrosepticum and Pectobacterium carotovorum Harbor Distinct, Independently Acquired Integrative and Conjugative Elements Encoding Coronafacic Acid that Enhance Virulence on Potato Stems

Peter C. Fineran, M. Fiers, C. Ronson, 2016, Front. Microbiol..

Imprecise Spacer Acquisition Generates CRISPR-Cas Immune Diversity through Primed Adaptation.

Peter C. Fineran, P. C. Fineran, Simon A. Jackson, 2019, Cell host & microbe.

Identification and classification of bacterial Type III toxin–antitoxin systems encoded in chromosomal and plasmid genomes

Peter C. Fineran, K. Mizuguchi, G. Salmond, 2012, Nucleic acids research.

A processed noncoding RNA regulates an altruistic bacterial antiviral system

Peter C. Fineran, G. Salmond, X. Pei, 2011, Nature Structural &Molecular Biology.

Biotechnological exploitation of bacteriophage research.

Peter C. Fineran, Nicola K. Petty, G. Salmond, 2007, Trends in biotechnology.

Inactivation of CRISPR-Cas systems by anti-CRISPR proteins in diverse bacterial species

Peter C. Fineran, Alan R Davidson, A. Davidson, 2016, Nature Microbiology.

Type III CRISPR–Cas provides resistance against nucleus-forming jumbo phages via abortive infection

Peter C. Fineran, P. C. Fineran, Simon A. Jackson, 2022, bioRxiv.

Remarkable Mechanisms in Microbes to Resist Phage Infections.

Peter C. Fineran, G. Salmond, P. C. Fineran, 2014, Annual review of virology.

The arms race between bacteria and their phage foes

Peter C. Fineran, P. C. Fineran, Hannah G. Hampton, 2020, Nature.

SdhE Is a Conserved Protein Required for Flavinylation of Succinate Dehydrogenase in Bacteria*

Peter C. Fineran, G. Salmond, Matthew B. McNeil, 2012, The Journal of Biological Chemistry.

AbiEi Binds Cooperatively to the Type IV abiE Toxin-Antitoxin Operator Via a Positively-Charged Surface and Causes DNA Bending and Negative Autoregulation.

Peter C. Fineran, Simon A. Jackson, T. R. Blower, 2018, Journal of molecular biology.

YgfX (CptA) is a multimeric membrane protein that interacts with the succinate dehydrogenase assembly factor SdhE (YgfY).

Peter C. Fineran, P. C. Fineran, Matthew B. McNeil, 2013, Microbiology.

The Cpf1 CRISPR-Cas protein expands genome-editing tools

Peter C. Fineran, R. Staals, Robert D. Fagerlund, 2015, Genome Biology.

Advances in Bacteriophage-Mediated Control of Plant Pathogens

Peter C. Fineran, P. C. Fineran, R. Frampton, 2012, International journal of microbiology.

Antitoxin autoregulation of M. tuberculosis toxin-antitoxin expression through negative cooperativity arising from multiple inverted repeat sequences

Peter C. Fineran, P. C. Fineran, T. R. Blower, 2020, The Biochemical journal.

Bioinformatic evidence of widespread priming in type I and II CRISPR-Cas systems

Chris M. Brown, Peter C. Fineran, R. Staals, 2018, RNA biology.

Interference-driven spacer acquisition is dominant over naive and primed adaptation in a native CRISPR–Cas system

Chris M. Brown, Stan J. J. Brouns, Peter C. Fineran, 2016, Nature Communications.

Degenerate target sites mediate rapid primed CRISPR adaptation

Jos Boekhorst, Stan J. J. Brouns, Peter C. Fineran, 2014, Proceedings of the National Academy of Sciences.

Prokaryotic assembly factors for the attachment of flavin to complex II.

Peter C. Fineran, P. C. Fineran, Matthew B. McNeil, 2013, Biochimica et biophysica acta.

Integrated regulation involving quorum sensing, a two-component system, a GGDEF/EAL domain protein and a post-transcriptional regulator controls swarming and RhlA-dependent surfactant biosynthesis in Serratia.

Peter C. Fineran, G. Salmond, P. C. Fineran, 2008, Environmental microbiology.

Biosynthesis of tripyrrole and β‐lactam secondary metabolites in Serratia: integration of quorum sensing with multiple new regulatory components in the control of prodigiosin and carbapenem antibiotic production

Peter C. Fineran, G. Salmond, H. Slater, 2005, Molecular microbiology.

Selectivity and self-assembly in the control of a bacterial toxin by an antitoxic noncoding RNA pseudoknot

Peter C. Fineran, G. Salmond, X. Pei, 2012, Proceedings of the National Academy of Sciences.

Phage-based biocontrol strategies and their application in agriculture and aquaculture.

Peter C. Fineran, P. C. Fineran, Luciano A. Rigano, 2018, Biochemical Society transactions.

Type III CRISPR-Cas systems can provide redundancy to counteract viral escape from type I systems

Peter C. Fineran, A. Fire, P. C. Fineran, 2017, eLife.

Anticancer and immunosuppressive properties of bacterial prodiginines.

Peter C. Fineran, G. Salmond, P. C. Fineran, 2007, Future microbiology.

Inhibitors of bacterial immune systems: discovery, mechanisms and applications.

Peter C. Fineran, David Mayo-Muñoz, Rafael Pinilla-Redondo, 2024, Nature reviews. Genetics.

Bacterial defense islands limit viral attack

Peter C. Fineran, P. C. Fineran, S. Meaden, 2021, Science.

A host of armor Prokaryotic immune strategies against mobile genetic elements

Peter C. Fineran, Rafael Pinilla-Redondo, N. Birkholz, 2022 .

Targeting of temperate phages drives loss of type I CRISPR-Cas systems

Peter C. Fineran, S. Gandon, E. Westra, 2019, Nature.

Gene regulation by engineered CRISPR-Cas systems.

Peter C. Fineran, Ron L. Dy, 2014, Current opinion in microbiology.

SorTn-seq: a high-throughput functional genomics approach to discovering regulators of bacterial gene expression

Peter C. Fineran, P. Gardner, P. C. Fineran, 2021, Nature Protocols.

A GntR family transcriptional regulator (PigT) controls gluconate-mediated repression and defines a new, independent pathway for regulation of the tripyrrole antibiotic, prodigiosin, in Serratia.

Peter C. Fineran, G. Salmond, H. Slater, 2005, Microbiology.

Variation at the common polysaccharide antigen locus drives lipopolysaccharide diversity within the Pseudomonas syringae species complex

Peter C. Fineran, M. Templeton, C. Mesarich, 2020, Environmental microbiology.

Variation at the common polysaccharide antigen locus drives lipopolysaccharide diversity within the P. syringae species complex

Peter C. Fineran, M. Templeton, C. Mesarich, 2020, bioRxiv.

A jumbo phage that forms a nucleus-like structure evades CRISPR–Cas DNA targeting but is vulnerable to type III RNA-based immunity

Peter C. Fineran, P. Gardner, P. C. Fineran, 2019, Nature Microbiology.

Gram-negative endolysins: overcoming the outer membrane obstacle.

Peter C. Fineran, Simon A. Jackson, Robert D. Fagerlund, 2024, Current opinion in microbiology.

CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids

Peter C. Fineran, Shiraz A. Shah, S. Sørensen, 2021, bioRxiv.

Chromosomal targeting by CRISPR-Cas systems can contribute to genome plasticity in bacteria

Peter C. Fineran, P. C. Fineran, A. Pitman, 2013, Mobile genetic elements.

CRISPRTarget

Chris M. Brown, Ambarish Biswas, Stan J. J. Brouns, 2013, RNA biology.

New antiviral defences are genetically embedded within prokaryotic immune systems

Peter C. Fineran, Simon A. Jackson, Leighton J. Payne, 2024, bioRxiv.

Novel configurations of type I and II CRISPR-Cas systems in Corynebacterium diphtheriae.

Peter C. Fineran, P. Hoskisson, P. C. Fineran, 2013, Microbiology.

The biology and type I/III hybrid nature of type I-D CRISPR–Cas systems

Peter C. Fineran, Robert D. Fagerlund, Tess M. McBride, 2023, The Biochemical journal.

Identification and classification of antiviral defence systems in bacteria and archaea with PADLOC reveals new system types

Peter C. Fineran, Franklin L. Nobrega, C. Ronson, 2021, Nucleic acids research.

Diverse CRISPR-Cas complexes require independent translation of small and large subunits from a single gene

Peter C. Fineran, David W. Taylor, E. Schwartz, 2020, bioRxiv.

GalK limits type I-F CRISPR-Cas expression in a CRP-dependent manner.

Peter C. Fineran, P. C. Fineran, Hannah G. Hampton, 2019, FEMS microbiology letters.

A Unified Resource for Tracking Anti-CRISPR Names.

Peter C. Fineran, J. Doudna, A. Davidson, 2018, The CRISPR journal.

CRISPR-Cas-Mediated Phage Resistance Enhances Horizontal Gene Transfer by Transduction

Peter C. Fineran, R. Staals, P. C. Fineran, 2018, mBio.

Regulation of the Type I-F CRISPR-Cas system by CRP-cAMP and GalM controls spacer acquisition and interference

Peter C. Fineran, P. C. Fineran, Corinda Taylor, 2015, Nucleic acids research.

Accurate computational prediction of the transcribed strand of CRISPR non-coding RNAs

Chris M. Brown, Peter C. Fineran, A. Biswas, 2014, Bioinform..

The subtype I-F CRISPR-Cas system influences pathogenicity island retention in Pectobacterium atrosepticum via crRNA generation and Csy complex formation.

Peter C. Fineran, P. C. Fineran, Corinna Richter, 2013, Biochemical Society transactions.

Memory of viral infections by CRISPR-Cas adaptive immune systems: acquisition of new information.

Peter C. Fineran, Emmanuelle Charpentier, E. Charpentier, 2012, Virology.

CRISPR-Cas gene-editing reveals RsmA and RsmC act through FlhDC to repress the SdhE flavinylation factor and control motility and prodigiosin production in Serratia

Peter C. Fineran, G. Salmond, M. Bostina, 2016, Microbiology.

The succinate dehydrogenase assembly factor, SdhE, is required for the flavinylation and activation of fumarate reductase in bacteria

Peter C. Fineran, G. Cook, Kiel Hards, 2014, FEBS letters.

The conserved RGxxE motif of the bacterial FAD assembly factor SdhE is required for succinate dehydrogenase flavinylation and activity.

Peter C. Fineran, P. C. Fineran, Matthew B. McNeil, 2013, Biochemistry.

Identification of Streptococcus pneumoniae genes associated with hypothiocyanous acid tolerance through genome-wide screening

Peter C. Fineran, A. Camilli, Heather L. Shearer, 2023, Journal of bacteriology.

A mobile restriction–modification system provides phage defence and resolves an epigenetic conflict with an antagonistic endonuclease

Peter C. Fineran, P. C. Fineran, Simon A. Jackson, 2022, Nucleic acids research.

PADLOC: a web server for the identification of antiviral defence systems in microbial genomes

Peter C. Fineran, P. C. Fineran, N. Toro, 2022, Nucleic Acids Res..

The PhoBR two-component system regulates antibiotic biosynthesis in Serratia in response to phosphate

Peter C. Fineran, G. Salmond, L. Everson, 2009, BMC Microbiology.

PigZ, a TetR/AcrR family repressor, modulates secondary metabolism via the expression of a putative four‐component resistance‐nodulation‐cell‐division efflux pump, ZrpADBC, in Serratia sp. ATCC 39006

Peter C. Fineran, G. Salmond, P. C. Fineran, 2008, Molecular microbiology.