Justin Chu

发表

Justin Chu, T Justin Clark, Arri Coomarasamy, 2018 .

Tigmint: correct assembly errors using linked reads from large molecules

Justin Chu, Hamid Mohamadi, René L. Warren, 2018 .

Justin Chu, T Justin Clark, Arri Coomarasamy, 2018 .

ntPack: A Software Package for Big Data in Genomics

Justin Chu, Hamid Mohamadi, Inanç Birol, 2018, 2018 IEEE/ACM 5th International Conference on Big Data Computing Applications and Technologies (BDCAT).

Tigmint: correcting assembly errors using linked reads from large molecules

Justin Chu, Hamid Mohamadi, René L. Warren, 2018, BMC Bioinformatics.

Improving sequence analysis with probabilistic data structures and algorithms

Justin Chu, Justin Chu, 2019 .

Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph

Justin Chu, Hamid Mohamadi, René L. Warren, 2014, 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Multi-Index Bloom Filters: A probabilistic data structure for sensitive multi-reference sequence classification with multiple spaced seeds

Justin Chu, Hamid Mohamadi, René L. Warren, 2018, RECOMB 2018.

ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers

Justin Chu, René L. Warren, Inanç Birol, 2018, BMC Bioinformatics.

Advance Access Publication Date: Dd Month Yyyy Manuscript Category Overlapping Long Sequence Reads: Current In- Novations and Challenges in Developing Sensi- Tive, Specific and Scalable Algorithms

Justin Chu, Hamid Mohamadi, René L. Warren, 2022 .

Practice circuit 1

Justin Chu, T Justin Clark, Arri Coomarasamy, 2018 .

TAP: a targeted clinical genomics pipeline for detecting transcript variants using RNA-seq data

Justin Chu, Inanc Birol, Ka Ming Nip, 2018, BMC Medical Genomics.

ntHash: recursive nucleotide hashing

Justin Chu, Hamid Mohamadi, Inanç Birol, 2016, Bioinform..

Spaced seed data structures

Justin Chu, Hamid Mohamadi, René L. Warren, 2014, 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

ABySS 2.0: Resource-Efficient Assembly of Large Genomes using a Bloom Filter

Justin Chu, Hamid Mohamadi, René L. Warren, 2016, bioRxiv.

Preparation for the MRCOG Part 3

Justin Chu, T Justin Clark, Arri Coomarasamy, 2018 .

Spaced Seed Data Structures for De Novo Assembly

Justin Chu, René L. Warren, Inanç Birol, 2015, International journal of genomics.

BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters

Justin Chu, Hamid Mohamadi, Inanç Birol, 2014, Bioinform..

NanoSim: nanopore sequence read simulator based on statistical characterization

Justin Chu, Inanç Birol, René L Warren, 2016, bioRxiv.

Kollector: transcript-informed, targeted de novo assembly of gene loci

Justin Chu, René L. Warren, Inanç Birol, 2017, Bioinform..

Physlr: Construct a physical map from linked reads

Justin Chu, Hamid Mohamadi, René L. Warren, 2019 .

ARCS: scaffolding genome drafts with linked reads

Justin Chu, René L. Warren, Inanç Birol, 2017, Bioinform..

ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs

Justin Chu, René L. Warren, Inanc Birol, 2020, bioRxiv.

Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules

Justin Chu, Hamid Mohamadi, René L. Warren, 2018 .

NanoSim: nanopore sequence read simulator based on statistical characterization

Justin Chu, René L. Warren, Inanc Birol, 2016 .

Improving on hash-based probabilistic sequence classification using multiple spaced seeds and multi-index Bloom filters

Justin Chu, Hamid Mohamadi, Inanc Birol, 2018 .

ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data

Justin Chu, Hamid Mohamadi, René L. Warren, 2017, Bioinform..

Kollector: transcript-informed, targeted de novo assembly of gene loci

Justin Chu, René L. Warren, Inanç Birol, 2017, Bioinform..

CONTEXT-AWARE DEBUGGING FOR CONCURRENT PROGRAMS

Justin Chu, J. Chu, 2017 .

Tigmint: correct misassemblies using linked reads from large molecules

Justin Chu, René L. Warren, Shaun D. Jackman, 2017 .

DIDA: Distributed Indexing Dispatched Alignment

Justin Chu, Anthony Raymond, Inanc Birol, 2015, PloS one.

ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter

Justin Chu, Hamid Mohamadi, Inanc Birol, 2016, bioRxiv.

Scaling ABySS to longer reads using spaced k -mers and Bloom filters

Justin Chu, Hamid Mohamadi, René L. Warren, 2015 .

Konnector v2.0: pseudo-long reads from paired-end sequencing data

Justin Chu, Hamid Mohamadi, Inanç Birol, 2015, BMC Medical Genomics.

RNA-Bloom provides lightweight reference-free transcriptome assembly for single cells

Justin Chu, Hamid Mohamadi, René L. Warren, 2019, bioRxiv.