Keith A Crandall

发表

ReQTL: identifying correlations between expressed SNVs and gene expression using RNA-sequencing data

Piotr Słowiński, Krasimira Tsaneva-Atanasova, Liam Spurr, 2019, Bioinform..

Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank

Leslie A Lenert, Jihad S Obeid, Keith A Crandall, 2020, Journal of the American Medical Informatics Association : JAMIA.

Validation of Variant Assembly Using HAPHPIPE with Next-Generation Sequence Data from Viruses

Keith A Crandall, Marcos Pérez-Losada, Keylie M Gibson, 2020, Viruses.

Drug Resistance Prediction Using Deep Learning Techniques on HIV-1 Sequence Data

Keith A Crandall, Keylie M Gibson, Margaret C Steiner, 2020, Viruses.

Similarity searching using BLAST.

Keith A Crandall, Kit J Menlove, Mark Clement, 2009, Methods in molecular biology.

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

Christina Boucher, Olivier Gascuel, Guy Baele, 2020, Proceedings of the National Academy of Sciences.

Recombination estimation under complex evolutionary models with the coalescent composite-likelihood method.

David Posada, Antonio Carvajal-Rodríguez, Keith A Crandall, 2006, Molecular biology and evolution.

PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples

Changjin Hong, Keith A Crandall, Solaiappan Manimaran, 2014, Microbiome.

Molecular systematics and biogeography of the southern South american freshwater "crabs" Aegla (decapoda: Anomura: Aeglidae) using multiple heuristic tree search approaches.

Georgina Bond-Buckup, Keith A Crandall, Marcos Pérez-Losada, 2004, Systematic biology.

Pathoscope: Species identification and strain attribution with unassembled sequencing data

Quinn Snell, Changjin Hong, Keith A Crandall, 2013, Genome research.

Interspecies physiological variation as a tool for cross-species assessments of global warming-induced endangerment: validation of an intrinsic determinant of macroecological and phylogeographic structure

Keith A Crandall, K. Crandall, J. Bernardo, 2007, Biology Letters.

Baseline human gut microbiota profile in healthy people and standard reporting template

Konstantinos Krampis, Raja Mazumder, Keith A Crandall, 2018, bioRxiv.

Whole genome single-nucleotide variation profile-based phylogenetic tree building methods for analysis of viral, bacterial and human genomes.

Raja Mazumder, Keith A Crandall, Vahan Simonyan, 2014, Genomics.

Evaluating the performance of likelihood methods for detecting population structure and migration

Zaid Abdo, Paul Joyce, Keith A Crandall, 2004, Molecular ecology.

Characterization of HIV diversity, phylodynamics and drug resistance in Washington, DC

Taylor J. Maxwell, Keith A Crandall, Marcos Pérez-Losada, 2017, PloS one.

EVOLUTIONARY BIOLOGY IN BIODIVERSITY SCIENCE, CONSERVATION, AND POLICY: A CALL TO ACTION

Christoph Häuser, Anne Larigauderie, Andrew P Hendry, 2010, Evolution; international journal of organic evolution.

Evolution. Genomic databases and the tree of life.

Keith A Crandall, Jennifer E Buhay, 2004, Science.

HIV-1 infected monozygotic twins: a tale of two outcomes

David Posada, Steven Hirschfeld, Keith A Crandall, 2011, BMC Evolutionary Biology.

Fecal Transplant in Children With Clostridioides difficile Gives Sustained Reduction in Antimicrobial Resistance and Potential Pathogen Burden

Keith A Crandall, Cynthia L Sears, Marcos Pérez-Losada, 2019, Open forum infectious diseases.