Hamid Mohamadi

发表

Parallel algorithms and software tools for high-throughput sequencing data

Hamid Mohamadi, H. Mohamadi, 2017 .

Tigmint: correct assembly errors using linked reads from large molecules

Justin Chu, Hamid Mohamadi, René L. Warren, 2018 .

ntHits: de novo repeat identification of genomics data using a streaming approach

Hamid Mohamadi, Inanc Birol, Lauren Coombe, 2020, bioRxiv.

Mismatch-tolerant, alignment-free sequence classification using multiple spaced seeds and multiindex Bloom filters

Hamid Mohamadi, Inanc Birol, Justin Chu, 2020, Proceedings of the National Academy of Sciences.

ntPack: A Software Package for Big Data in Genomics

Justin Chu, Hamid Mohamadi, Inanç Birol, 2018, 2018 IEEE/ACM 5th International Conference on Big Data Computing Applications and Technologies (BDCAT).

Tigmint: correcting assembly errors using linked reads from large molecules

Justin Chu, Hamid Mohamadi, René L. Warren, 2018, BMC Bioinformatics.

ntCard: a streaming algorithm for cardinality estimation in genomics data

Hamid Mohamadi, Inanç Birol, Hamza Khan, 2017, Bioinform..

Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph

Justin Chu, Hamid Mohamadi, René L. Warren, 2014, 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

BOND: Basic OligoNucleotide Design

Hamid Mohamadi, Lucian Ilie, William F. Smyth, 2013, BMC Bioinformatics.

Multi-Index Bloom Filters: A probabilistic data structure for sensitive multi-reference sequence classification with multiple spaced seeds

Justin Chu, Hamid Mohamadi, René L. Warren, 2018, RECOMB 2018.

Advance Access Publication Date: Dd Month Yyyy Manuscript Category Overlapping Long Sequence Reads: Current In- Novations and Challenges in Developing Sensi- Tive, Specific and Scalable Algorithms

Justin Chu, Hamid Mohamadi, René L. Warren, 2022 .

ntEdit: scalable genome sequence polishing

Hamid Mohamadi, Inanç Birol, Lauren Coombe, 2019, Bioinform..

ntHash: recursive nucleotide hashing

Justin Chu, Hamid Mohamadi, Inanç Birol, 2016, Bioinform..

Spaced seed data structures

Justin Chu, Hamid Mohamadi, René L. Warren, 2014, 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

ABySS 2.0: Resource-Efficient Assembly of Large Genomes using a Bloom Filter

Justin Chu, Hamid Mohamadi, René L. Warren, 2016, bioRxiv.

BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters

Justin Chu, Hamid Mohamadi, Inanç Birol, 2014, Bioinform..

Misuse Intrusion Detection Using a Fuzzy-Metaheuristic Approach

Hamid Mohamadi, Mohammad Saniee Abadeh, Jafar Habibi, 2008, 2008 Second Asia International Conference on Modelling & Simulation (AMS).

Physlr: Construct a physical map from linked reads

Justin Chu, Hamid Mohamadi, René L. Warren, 2019 .

Knowledge Discovery Using a New Interpretable Simulated Annealing Based Fuzzy Classification System

Hamid Mohamadi, Jafar Habibi, Shahrouz Moaven, 2009, ACIIDS.

A Novel Fuzzy Genetic Annealing Classification Approach

Hamid Mohamadi, Mohammad Saniee Abadeh, Maziyar Baran Pouyan, 2009, 2009 Third UKSim European Symposium on Computer Modeling and Simulation.

Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules

Justin Chu, Hamid Mohamadi, René L. Warren, 2018 .

Data mining with a simulated annealing based fuzzy classification system

Hamid Mohamadi, Mohammad Saniee Abadeh, Jafar Habibi, 2008, Pattern Recognit..

Improving on hash-based probabilistic sequence classification using multiple spaced seeds and multi-index Bloom filters

Justin Chu, Hamid Mohamadi, Inanc Birol, 2018 .

Design and analysis of genetic fuzzy systems for intrusion detection in computer networks

Hamid Mohamadi, Mohammad Saniee Abadeh, Jafar Habibi, 2011, Expert Syst. Appl..

ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data

Justin Chu, Hamid Mohamadi, René L. Warren, 2017, Bioinform..

ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter

Justin Chu, Hamid Mohamadi, Inanc Birol, 2016, bioRxiv.

Scaling ABySS to longer reads using spaced k -mers and Bloom filters

Justin Chu, Hamid Mohamadi, René L. Warren, 2015 .

Konnector v2.0: pseudo-long reads from paired-end sequencing data

Justin Chu, Hamid Mohamadi, Inanç Birol, 2015, BMC Medical Genomics.

RNA-Bloom provides lightweight reference-free transcriptome assembly for single cells

Justin Chu, Hamid Mohamadi, René L. Warren, 2019, bioRxiv.

Oligonucleotide Probe Design for Large Genomes using Multiple Spaced Seeds

Hamid Mohamadi, H. Mohamadi, 2012 .

Assessment of aflatoxin M1 levels in selected dairy products in north-western Iran

Hamid Mohamadi, Jamshid Rahimi, H. Mohamadi, 2010 .