Minoru Kanehisa

发表

GENIES: gene network inference engine based on supervised analysis

Yoshihiro Yamanishi, Susumu Goto, Masaaki Kotera, 2012, Nucleic Acids Res..

LIGAND: chemical database for enzyme reactions

Susumu Goto, Minoru Kanehisa, Takaaki Nishioka, 1998, Bioinform..

Update of MAGEST: Maboya Gene Expression patterns and Sequence Tags

Minoru Kanehisa, Takeshi Kawashima, Shuichi Kawashima, 2002, Nucleic Acids Res..

Extraction and Analysis of Chemical Modification Patterns in Drug Development

Susumu Goto, Minoru Kanehisa, Shujiro Okuda, 2009, J. Chem. Inf. Model..

A Signal Transduction Database

Kenji Suzuki, Susumu Goto, Minoru Kanehisa, 1994 .

PathPred: an enzyme-catalyzed metabolic pathway prediction server

Susumu Goto, Masaaki Kotera, Yuki Moriya, 2010, Nucleic Acids Res..

KEGG: new perspectives on genomes, pathways, diseases and drugs

Minoru Kanehisa, Miho Furumichi, Mao Tanabe, 2016, Nucleic Acids Res..

Tools for investigating mechanisms of antigenic variation: new extensions to varDB.

Susumu Goto, Minoru Kanehisa, C Nelson Hayes, 2009, Genome informatics. International Conference on Genome Informatics.

Clustering of database sequences for fast homology search using upper bounds on alignment score.

Tatsuya Akutsu, Minoru Kanehisa, Masumi Itoh, 2004, Genome informatics. International Conference on Genome Informatics.

Los Alamos Sequence Library: a database and analysis system for nucleic acid sequences

Minoru Kanehisa, James W. Fickett, Walter B. Goad, 1982 .

Development of an integrated database for genome mapping and nucleotide sequences

Satoru Kuhara, Takahiko Suzuki, Toshihisa Takagi, 1994, 1994 Proceedings of the Twenty-Seventh Hawaii International Conference on System Sciences.

LIGAND database for enzymes, compounds and reactions

Susumu Goto, Minoru Kanehisa, Takaaki Nishioka, 1999, Nucleic Acids Res..

The Construction of the Knowledge Base of Immune System

Minoru Kanehisa, Yoshinobu Igarashi, 1998 .

Bioinformatics approaches in glycomics and drug discovery.

Kiyoko F. Aoki-Kinoshita, Minoru Kanehisa, Kiyoko F Aoki-Kinoshita, 2006, Current opinion in molecular therapeutics.

Developing Molecular Interaction Database and Searching for Similar Pathways (MOLECULAR BIOLOGY AND INFORMATION-Biological Information Science)

Minoru Kanehisa, Shuichi Kawashima, Toshiaki Katayama, 1998 .

MUCHA: multiple chemical alignment algorithm to identify building block substructures of orphan secondary metabolites

Susumu Goto, Masaaki Kotera, Minoru Kanehisa, 2011, BMC Bioinformatics.

VisANT 3.0: new modules for pathway visualization, editing, prediction and construction

Zhenjun Hu, Charles DeLisi, Minoru Kanehisa, 2007, Nucleic Acids Res..

KEGG for Medical and Pharmaceutical Applications

Minoru Kanehisa, 2008, APBC.

Construction of a Functional Word Dictionary for Primate Promoter Sequences

Minoru Kanehisa, Wataru Fujibuchi, M. Kanehisa, 1993 .

PLOC: Prediction of Subcellular Location of Proteins

Minoru Kanehisa, Keun-Joon Park, Yutaka Akiyama, 2003 .

LIGAND: chemical database of enzyme reactions

Susumu Goto, Minoru Kanehisa, Takaaki Nishioka, 2000, Nucleic Acids Res..

The commonality of protein interaction networks determined in neurodegenerative disorders (NDDs)

Susumu Goto, Minoru Kanehisa, Kunihiro Ueda, 2007, Bioinform..

A quadratic programming approach for decomposing steady-state metabolic flux distributions onto elementary modes

Minoru Kanehisa, Jean-Marc Schwartz, M. Kanehisa, 2005, ECCB/JBI.

Automatic Procedure to Extract Signature Pentapeptides from the Protein Sequence Database

Minoru Kanehisa, Ikuo Uchiyama, Atsushi Ogiwara, 1993 .

The KEGG databases at GenomeNet

Susumu Goto, Minoru Kanehisa, Shuichi Kawashima, 2002, Nucleic Acids Res..

KEGG Bioinformatics Resource for Plant Genomics and Metabolomics.

Minoru Kanehisa, M. Kanehisa, 2016, Methods in molecular biology.

The GenBank nucleic acid sequence database

Minoru Kanehisa, James W. Fickett, Christian Burks, 1985, Comput. Appl. Biosci..

Construction of Molecular Interaction Database and Searching for Similar Pathways

Minoru Kanehisa, Shuichi Kawashima, Toshiaki Katayama, 1997 .

An integrated database SPAD (Signaling PAthway Database) for signal transduction and genetic information

Satoru Kuhara, Minoru Kanehisa, Toshihisa Takagi, 1995 .

Data, information, knowledge and principle: back to metabolism in KEGG

Susumu Goto, Minoru Kanehisa, Miho Furumichi, 2013, Nucleic Acids Res..

AAindex: Amino Acid Index Database

Hiroyuki Ogata, Minoru Kanehisa, Shuichi Kawashima, 1999, Nucleic Acids Res..

ODB: a database of operons accumulating known operons across multiple genomes

Susumu Goto, Minoru Kanehisa, Shujiro Okuda, 2005, Nucleic Acids Res..

Extraction of correlated gene clusters from multiple genomic data by generalized kernel canonical correlation analysis

Yoshihiro Yamanishi, Jean-Philippe Vert, Minoru Kanehisa, 2003, ISMB.

KEGG: Kyoto Encyclopedia of Genes and Genomes

Hiroyuki Ogata, Susumu Goto, Minoru Kanehisa, 1999, Nucleic Acids Res..

Graph-Driven Feature Extraction From Microarray Data Using Diffusion Kernels and Kernel CCA

Jean-Philippe Vert, Minoru Kanehisa, M. Kanehisa, 2002, NIPS.

Quantitative elementary mode analysis of metabolic pathways: the example of yeast glycolysis

Minoru Kanehisa, Jean-Marc Schwartz, M. Kanehisa, 2006, BMC Bioinformatics.

Modular Architecture of Metabolic Pathways Revealed by Conserved Sequences of Reactions

Susumu Goto, Masaaki Kotera, Minoru Kanehisa, 2013, J. Chem. Inf. Model..

Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework

Yoshihiro Yamanishi, Susumu Goto, Masaaki Kotera, 2010, Bioinform..

KEGG API: A Web Service Using SOAP/WSDL to Access the KEGG System

Minoru Kanehisa, Shuichi Kawashima, Toshiaki Katayama, 2003 .

BioRuby: Object Oriented Open Source Library for Bioinformatics

Minoru Kanehisa, Shuichi Kawashima, Toshiaki Katayama, 2002 .

Combining kinetics and network-based pathway analysis

Minoru Kanehisa, Jean-Marc Schwartz, 2004 .

Mining significant tree patterns in carbohydrate sugar chains

Minoru Kanehisa, Ichigaku Takigawa, Hiroshi Mamitsuka, 2008, ECCB.

From genomics to chemical genomics: new developments in KEGG

Kiyoko F. Aoki-Kinoshita, Susumu Goto, Minoru Kanehisa, 2005, Nucleic Acids Res..

Detection of Apoptotic Domains Against KEGG Database by the HMM Search

Minoru Kanehisa, Masahiro Hattori, M. Kanehisa, 1999 .

Clustering under the line graph transformation: application to reaction network

Tatsuya Akutsu, Jose C. Nacher, Minoru Kanehisa, 2004, BMC Bioinformatics.

Deductive Calculation Library for KEGG Pathway Simulation

Susumu Goto, Minoru Kanehisa, Wataru Fujibuchi, 1996 .

KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data

Hideyuki Suzuki, Kazuki Saito, Yoshiyuki Ogata, 2010, Nucleic Acids Res..

Statistical Significance of Tree Similarity Scores

Tatsuya Akutsu, Atsuko Yamaguchi, Minoru Kanehisa, 2003 .

Automated interpretation of metabolic capacity from genome and metagenome sequences

Minoru Kanehisa, M. Kanehisa, 2013, Quantitative Biology.

AAindex: Amino Acid index database

Minoru Kanehisa, Shuichi Kawashima, M. Kanehisa, 2000, Nucleic Acids Res..

DINIES: drug–target interaction network inference engine based on supervised analysis

Yoshihiro Yamanishi, Susumu Goto, Masaaki Kotera, 2014, Nucleic Acids Res..

KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold

Hiroyuki Ogata, Susumu Goto, Minoru Kanehisa, 2019, bioRxiv.

Systematic Analysis of Enzyme-Catalyzed Reaction Patterns and Prediction of Microbial Biodegradation Pathways

Susumu Goto, Minoru Kanehisa, Masahiro Hattori, 2007, J. Chem. Inf. Model..

Sequence Motif Analysis and Retrieval Tool

Minoru Kanehisa, Ikuo Uchiyama, Atsushi Ogiwara, 1993 .

BioRuby: Open-Source Bioinformatics Library

Minoru Kanehisa, Toshiaki Katayama, Mitsuteru Nakao, 2003 .

Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions

Yoshihiro Yamanishi, Tetsuya Sato, Minoru Kanehisa, 2006, Bioinform..

Fast and accurate database homology search using upper bounds of local alignment scores

Tatsuya Akutsu, Susumu Goto, Minoru Kanehisa, 2005, Bioinform..

Automatic construction of a dictionary of sequence motifs that characterize groups of similar proteins

Minoru Kanehisa, Ikuo Uchiyama, Atsushi Ogiwara, 1991 .

The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships

Yoshihiro Yamanishi, Tetsuya Sato, Minoru Kanehisa, 2005, Bioinform..

Evaluation of potential functions for protein simulation

Minoru Kanehisa, Masaki Sasai, Fumi Takazawa, 1998 .

A relational database system for the maintenance and verification of the Los Alamos sequence library

Minoru Kanehisa, James W. Fickett, W. B. Goad, 1984, Nucleic Acids Res..

An Integrated Gene Mapping Database “HyperGenome System”

Minoru Kanehisa, 久原哲, Susumu Nakashima, 1993 .

Population Model-Based Inter-Diplotype Similarity Measure for Accurate Diplotype Clustering

Tetsuo Shibuya, Ryo Yamada, Minoru Kanehisa, 2012, J. Comput. Biol..

Network-Based Analysis and Characterization of Adverse Drug-Drug Interactions

Susumu Goto, Masaaki Kotera, Minoru Kanehisa, 2011, J. Chem. Inf. Model..

Extraction of phylogenetic network modules from the metabolic network

Susumu Goto, Minoru Kanehisa, Takuji Yamada, 2006, BMC Bioinformatics.

Utilizing Evolutionary Information and Gene Expression Data for Estimating Gene Networks with Bayesian Network Models

Satoru Miyano, Hideo Bannai, Seiya Imoto, 2005, J. Bioinform. Comput. Biol..

KCF-S: KEGG Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics

Yasuo Tabei, Yoshihiro Yamanishi, Susumu Goto, 2013, BMC Systems Biology.

Integration of Bioinformatics and Cheminformatics in KEGG

Minoru Kanehisa, 2003 .

Integrated GENES Database in KEGG

Minoru Kanehisa, Kazushige Sato, Toyoko Katsurada, 1997 .

Data Mining for Systems Biology

Charles DeLisi, Minoru Kanehisa, Hiroshi Mamitsuka, 2013, Methods in Molecular Biology.

Efficient tree-matching methods for accurate carbohydrate database queries.

Tatsuya Akutsu, Atsuko Yamaguchi, Minoru Kanehisa, 2003, Genome informatics. International Conference on Genome Informatics.

Supervised enzyme network inference from the integration of genomic data and chemical information

Yoshihiro Yamanishi, Jean-Philippe Vert, Minoru Kanehisa, 2005, ISMB.

Sequence comparison to graph comparison—a new generation of algorithms for network analysis of interacting molecules (abstract only)

Minoru Kanehisa, 2000, RECOMB '00.

KEGG bioinformatics resource for plant genomics research.

Susumu Goto, Minoru Kanehisa, Ali Masoudi-Nejad, 2007, Methods in molecular biology.

Representation and analysis of molecular networks involving diseases and drugs.

Minoru Kanehisa, M. Kanehisa, 2009, Genome informatics. International Conference on Genome Informatics.

Java Applets for Handling Genome Maps in KEGG

Minoru Kanehisa, Kazushige Sato, Toyoko Katsurada, 1996 .

HMM Search for Apoptotic Domains (MOLECULAR BIOLOGY AND INFORMATION-Biological Information Science)

Minoru Kanehisa, Masahiro Hattori, M. Kanehisa, 2000 .

Inference of Protein-Protein Interactions by Using Co-evolutionary Information

Yoshihiro Yamanishi, Tetsuya Sato, Minoru Kanehisa, 2007, AB.

Multiple sequence alignment by combining incomplete blocks of similar segments

Kenji Suzuki, Minoru Kanehisa, Yutaka Akiyama, 1995 .

KEGG for representation and analysis of molecular networks involving diseases and drugs

Susumu Goto, Minoru Kanehisa, Miho Furumichi, 2009, Nucleic Acids Res..

Extracting active pathways from gene expression data

Jean-Philippe Vert, Minoru Kanehisa, M. Kanehisa, 2003, ECCB.

Prediction of glycan structures from gene expression data based on glycosyltransferase reactions

Susumu Goto, Minoru Kanehisa, Shin Kawano, 2005, Bioinform..

Characterizing common substructures of ligands for GPCR protein subfamilies.

Susumu Goto, Minoru Kanehisa, Masahiro Hattori, 2010, Genome informatics. International Conference on Genome Informatics.

The KEGG database.

Minoru Kanehisa, M. Kanehisa, 2002, Novartis Foundation symposium.

KEGG for integration and interpretation of large-scale molecular data sets

Susumu Goto, Minoru Kanehisa, Miho Furumichi, 2011, Nucleic Acids Res..

The KEGG resource for deciphering the genome

Susumu Goto, Minoru Kanehisa, Masahiro Hattori, 2004, Nucleic Acids Res..

Regulation of metabolic networks by small molecule metabolites

Susumu Goto, Minoru Kanehisa, Alex Gutteridge, 2007, BMC Bioinformatics.

MIMOX: a web tool for phage display based epitope mapping

Minoru Kanehisa, Alex Gutteridge, Jian Huang, 2006, BMC Bioinformatics.

KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains

Tatsuya Akutsu, Kiyoko F. Aoki-Kinoshita, Atsuko Yamaguchi, 2004, Nucleic Acids Res..

E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs

Yoshihiro Yamanishi, Susumu Goto, Masaaki Kotera, 2009, Bioinform..

MAGEST: MAboya Gene Expression patterns and Sequence Tags

Minoru Kanehisa, Takeshi Kawashima, Shuichi Kawashima, 2000, Nucleic Acids Res..

Generalized reaction patterns for prediction of unknown enzymatic reactions.

Susumu Goto, Minoru Kanehisa, Masahiro Hattori, 2008, Genome informatics. International Conference on Genome Informatics.

KEGG for linking genomes to life and the environment

Yoshihiro Yamanishi, Susumu Goto, Minoru Kanehisa, 2007, Nucleic Acids Res..

Decomposition of kinetically feasible metabolic flux distributions onto elementary modes

Minoru Kanehisa, Jean-Marc Schwartz, 2004 .

KEGG/EXPRESSION: A Database for Browsing and Analysing Microarray Expression Data

Satoshi Miyazaki, Susumu Goto, Minoru Kanehisa, 2000 .

Identification of metabolic units induced by environmental signals

Tatsuya Akutsu, Jose C. Nacher, Minoru Kanehisa, 2006, ISMB.

SIMCOMP/SUBCOMP: chemical structure search servers for network analyses

Susumu Goto, Minoru Kanehisa, Masahiro Hattori, 2010, Nucleic Acids Res..

Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs

Minoru Kanehisa, Keun-Joon Park, M. Kanehisa, 2003, Bioinform..

New approach for understanding genome variations in KEGG

Minoru Kanehisa, Miho Furumichi, Mao Tanabe, 2018, Nucleic Acids Res..

Invitation to Genome Informatics Workshop II

Minoru Kanehisa, 1991 .

Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach

Susumu Goto, Minoru Kanehisa, Masashi Fujita, 2007, BMC Bioinformatics.

KEGG Atlas mapping for global analysis of metabolic pathways

Peer Bork, Susumu Goto, Minoru Kanehisa, 2008, Nucleic Acids Res..

AAindex: amino acid index database, progress report 2008

Minoru Kanehisa, Shuichi Kawashima, Andrzej Kolinski, 2007, Nucleic Acids Res..

Application of Parallelized DP and A Algorithm to Multiple Sequence Alignment

Hiroshi Nakashima, Masahiro Goshima, Shin-ichiro Mori, 1993 .

Protein network inference from multiple genomic data: a supervised approach

Yoshihiro Yamanishi, Jean-Philippe Vert, Minoru Kanehisa, 2004, ISMB/ECCB.

Prediction of drug–target interaction networks from the integration of chemical and genomic spaces

Yoshihiro Yamanishi, Minoru Kanehisa, Michihiro Araki, 2008, ISMB.

PIERO ontology for analysis of biochemical transformations: Effective implementation of reaction information in the IUBMB enzyme list

Yosuke Nishimura, Susumu Goto, Masaaki Kotera, 2014, J. Bioinform. Comput. Biol..

KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters

Yoshihiro Yamanishi, Susumu Goto, Yuki Moriya, 2012, Nucleic Acids Res..

Extraction of a Thermodynamic Property for Biochemical Reactions in the Metabolic Pathway

Shunsuke Uemura, Susumu Goto, Minoru Kanehisa, 2003 .

EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments

Masanori Suzuki, Ali Masoudi-Nejad, Susumu Goto, 2006, Nucleic Acids Res..

varDB: a pathogen-specific sequence database of protein families involved in antigenic variation

Susumu Goto, Minoru Kanehisa, Nicolas Joannin, 2008, Bioinform..

Towards zoomable multidimensional maps of the cell

Zhenjun Hu, Charles DeLisi, Minoru Kanehisa, 2007, Nature Biotechnology.

KAAS: an automatic genome annotation and pathway reconstruction server

Yuki Moriya, Minoru Kanehisa, Shujiro Okuda, 2007, Nucleic Acids Res..

KEGG: Kyoto Encyclopedia of Genes and Genomes

Susumu Goto, Minoru Kanehisa, M. Kanehisa, 2000, Nucleic Acids Res..

Wide-area Network "GenomeNet" and Distributed Genetic Information Processing

Minoru Kanehisa, Atsushi Ogiwara, 1991 .

Systematic Detection of Protein Structural Motifs

Minoru Kanehisa, Kentaro Tomii, M. Kanehisa, 1999, Pattern Discovery in Biomolecular Data.

KEGG as a reference resource for gene and protein annotation

Minoru Kanehisa, Miho Furumichi, Mao Tanabe, 2015, Nucleic Acids Res..

Extraction of Correlated Gene Clusters from Multiple Graph Structures: Application

Susumu Goto, Minoru Kanehisa, Shuichi Kawashima, 2000 .

New kernel methods for phenotype prediction from genotype data.

Tetsuo Shibuya, Minoru Kanehisa, Ritsuko Onuki, 2010, Genome informatics. International Conference on Genome Informatics.

iPath2.0: interactive pathway explorer

Peer Bork, Minoru Kanehisa, Shujiro Okuda, 2011, Nucleic Acids Res..

Further Improvements on SMART

Minoru Kanehisa, Ikuo Uchiyama, Toshihisa Takagi, 1994 .

KEGG: integrating viruses and cellular organisms

Minoru Kanehisa, Miho Furumichi, Mao Tanabe, 2020, Nucleic Acids Res..

Molecular network analysis of diseases and drugs in KEGG.

Minoru Kanehisa, M. Kanehisa, 2013, Methods in molecular biology.

Identification of a new cryptochrome class. Structure, function, and evolution.

Minoru Kanehisa, John A Tainer, Victoria A Roberts, 2003, Molecular cell.

Database of Operons in Bacillus subtilis

Minoru Kanehisa, Shujiro Okuda, Shuichi Kawashima, 2002 .

Analysis of protein interaction networks in neurodegenerative disorders

Susumu Goto, Minoru Kanehisa, Vachiranee Limviphuvadh, 2005 .

Mining Patterns from Glycan Structures

Minoru Kanehisa, Ichigaku Takigawa, Hiroshi Mamitsuka, 2010 .

Extraction of phylogenetic network modules from prokayrote metabolic pathways.

Susumu Goto, Minoru Kanehisa, Takuji Yamada, 2004, Genome informatics. International Conference on Genome Informatics.

Symbol Nomenclature for Graphical Representations of Glycans.

Evan Bolton, Kiyoko F. Aoki-Kinoshita, Minoru Kanehisa, 2015, Glycobiology.

Extraction of species-specific glycan substructures.

Yoshihiro Yamanishi, Minoru Kanehisa, Kosuke Hashimoto, 2004, Genome informatics. International Conference on Genome Informatics.

Extraction of Organism Groups from Whole Genome Comparisons

Yoshihiro Yamanishi, Minoru Kanehisa, Akiyasu C. Yoshizawa, 2003 .

Comprehensive Analysis of Delay in Transcriptional Regulation Using Expression Profiles

Yoshihiro Yamanishi, Susumu Goto, Minoru Kanehisa, 2003 .

Inferring Antimicrobial Resistance from Pathogen Genomes in KEGG.

Minoru Kanehisa, 2018, Methods in molecular biology.

EGENES: Transcriptome-Based Plant Database of Genes with Metabolic Pathway Information and Expressed Sequence Tag Indices in KEGG1[C][W][OA]

Ali Masoudi-Nejad, Susumu Goto, Yuki Moriya, 2007, Plant Physiology.

Comprehensive analysis of distinctive polyketide and nonribosomal peptide structural motifs encoded in microbial genomes.

Minoru Kanehisa, Michihiro Araki, M. Kanehisa, 2007, Journal of molecular biology.

The Construction of the Knowledge Base on Apoptotic Molecular Interactions

Minoru Kanehisa, Masahiro Hattori, M. Kanehisa, 1997 .

Global Analysis of Circadian Expression in the Cyanobacterium Synechocystis sp. Strain PCC 6803

Minoru Kanehisa, M. Kanehisa, M. Ishiura, 2005, Journal of bacteriology.

Glycomic analysis using KEGG GLYCAN.

Minoru Kanehisa, Kiyoko F Aoki-Kinoshita, 2015, Methods in molecular biology.

Self-Nonself Discrimination Based on Incompatibility of Amino Acid Sequences of Human and Viruses

Minoru Kanehisa, Shuichi Kawashima, Wataru Honda, 2003 .

KEGG and GenomeNet Resources for Predicting Protein Function from Omics Data Including KEGG PLANT Resource

Susumu Goto, Masaaki Kotera, Minoru Kanehisa, 2011 .

GLYCAN: The Database of Carbohydrate Structures

Susumu Goto, Minoru Kanehisa, Kosuke Hashimoto, 2003 .

Analysis of common substructures of metabolic compounds within the different organism groups.

Minoru Kanehisa, Masahiro Hattori, Ai Muto, 2007, Genome informatics. International Conference on Genome Informatics.

New amino acid indices based on residue network topology.

Minoru Kanehisa, Shuichi Kawashima, M. Kanehisa, 2007, Genome informatics. International Conference on Genome Informatics.

Extracting Sequence Motifs and the Phylogenetic Features of SNARE‐Dependent Membrane Traffic

Yuki Moriya, Minoru Kanehisa, Shujiro Okuda, 2006, Traffic.

Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli

Susumu Goto, Minoru Kanehisa, Shujiro Okuda, 2007, BMC Genomics.

LIGAND Chemical Database for Enzymatic Reactions:A Link between enzyme structures and chemical reactions

Susumu Goto, Minoru Kanehisa, Yutaka Akiyama, 1995 .

Extraction of organism groups from phylogenetic profiles using independent component analysis.

Yoshihiro Yamanishi, Minoru Kanehisa, Masumi Itoh, 2002, Genome informatics. International Conference on Genome Informatics.

The Construction of a Database for Ubiquitin Signaling Cascade

Minoru Kanehisa, Akiyasu C. Yoshizawa, Shuichi Kawashima, 2003 .

The size differences among mammalian introns are due to the accumulation of small deletions

Minoru Kanehisa, Hiroyuki Ogata, Wataru Fujibuchi, 1996, FEBS letters.

Domain shuffling and the evolution of vertebrates.

Minoru Kanehisa, Takeshi Kawashima, Shuichi Kawashima, 2009, Genome research.

Prediction of Protein-Protein Interactions Based on Real-Valued Phylogenetic Profiles Using Partial Correlation Coefficient

Yoshihiro Yamanishi, Minoru Kanehisa, M. Kanehisa, 2004 .

Extraction of leukemia specific glycan motifs in humans by computational glycomics.

Yoshihiro Yamanishi, Susumu Goto, Minoru Kanehisa, 2005, Carbohydrate research.

Prediction of Membrane Proteins in Post-Genomic Era

Daisuke Kihara, Minoru Kanehisa, Donald Danforth, 2007 .

Comprehensive analysis of glycosyltransferases in eukaryotic genomes for structural and functional characterization of glycans.

Susumu Goto, Minoru Kanehisa, Shujiro Okuda, 2009, Carbohydrate research.

Systems biology approaches and pathway tools for investigating cardiovascular disease w

Susumu Goto, Minoru Kanehisa, Shuichi Kawashima, 2009 .

The Prediction of a Protein and Nucleic Acid Structure: Problems and Prospects

Charles DeLisi, Minoru Kanehisa, 1985 .

Characterization and classification of adverse drug interactions.

Susumu Goto, Masaaki Kotera, Minoru Kanehisa, 2010, Genome informatics. International Conference on Genome Informatics.

A global representation of the carbohydrate structures: a tool for the analysis of glycan.

Kiyoko F. Aoki-Kinoshita, Susumu Goto, Minoru Kanehisa, 2005, Genome informatics. International Conference on Genome Informatics.

Toward Pathway Engineering: A New Database of Genetic and Molecular Pathways

Minoru Kanehisa, M. Kanehisa, 1997 .

Screening for the target gene of cyanobacterial cAMP receptor protein SYCRP1

Minoru Kanehisa, Shuichi Yanagisawa, Hidehisa Yoshimura, 2002, Molecular microbiology.

Improvement of the LIGAND Chemical Database

Susumu Goto, Minoru Kanehisa, Masahiro Hattori, 2002 .

Analysis of Binary Relations and Hierarchies of Enzymes in the Metabolic Pathways

Susumu Goto, Minoru Kanehisa, Hidemasa Bono, 1996 .

Systems biology approaches and pathway tools for investigating cardiovascular disease.

Susumu Goto, Minoru Kanehisa, Shuichi Kawashima, 2009, Molecular bioSystems.

Gene annotation and pathway mapping in KEGG.

Kiyoko F. Aoki-Kinoshita, Minoru Kanehisa, Kiyoko F Aoki-Kinoshita, 2007, Methods in molecular biology.

AAindex: A Database of Amino Acid Indices and Mutation Matrices

Minoru Kanehisa, Kentaro Tomii, M. Kanehisa, 1995 .

KEGG as a glycome informatics resource.

Kiyoko F. Aoki-Kinoshita, Susumu Goto, Minoru Kanehisa, 2006, Glycobiology.

The prediction of a protein and nucleic acid structure: Problems and prospects

Charles DeLisi, Minoru Kanehisa, 1985 .

Predicting microbial biodegradation pathways

Donald J. Berndt, Minoru Kanehisa, Lawrence P. Wackett, 1999 .

Using protein motif combinations to update KEGG pathway maps and orthologue tables.

Minoru Kanehisa, Frédérique Lisacek, Bastien Rance, 2004, Genome informatics. International Conference on Genome Informatics.

DNA Microarray Analysis of Redox-Responsive Genes in the Genome of the Cyanobacterium Synechocystis sp. Strain PCC 6803

Minoru Kanehisa, Masahiko Ikeuchi, Y. Hihara, 2003, Journal of bacteriology.

Complete Genome Sequence Reconstruction of Amino Acid Biosynthesis Pathways from the References

Susumu Goto, Minoru Kanehisa, Hidemasa Bono, 1998 .