Forest Rohwer

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Mucus Distribution Model in a Lung with Cystic Fibrosis

Peter Salamon, Sara Zarei, Ali Mirtar, 2012, Comput. Math. Methods Medicine.

TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets

Forest Rohwer, Robert A. Edwards, Robert Schmieder, 2010, BMC Bioinformatics.

PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information

Peter Salamon, Forest Rohwer, Florent E. Angly, 2005, BMC Bioinformatics.

FastGroup: A program to dereplicate libraries of 16S rDNA sequences

Victor Seguritan, Forest Rohwer, F. Rohwer, 2001, BMC Bioinformatics.

An application of statistics to comparative metagenomics

Forest Rohwer, Robert A. Edwards, Beltran Rodriguez-Brito, 2006, BMC Bioinformatics.

The GAAS Metagenomic Tool and Its Estimations of Viral and Microbial Average Genome Size in Four Major Biomes

Forest Rohwer, Rick L. Stevens, Robert A. Edwards, 2009, PLoS Comput. Biol..

Finding novel genes in bacterial communities isolated from the environment

Daniela Bartels, Folker Meyer, Jens Stoye, 2006, ISMB.

Deviations from Ultrametricity in Phage Protein Distances

Peter Salamon, Forest Rohwer, Robert A. Edwards, 2009, Open Syst. Inf. Dyn..

Building an OptIPlanet collaboratory to support microbial metagenomics

Larry Smarr, Thomas A. DeFanti, Forest Rohwer, 2009, Future Gener. Comput. Syst..

Mathematical Modeling of Cystic Fibrosis Ecology

Peter Salamon, Sara Zarei, Forest Rohwer, 2009, BIOCOMP.

Entropy in the Tangled Nature Model of Evolution

Peter Salamon, Forest Rohwer, James Nulton, 2017, Entropy.

Elucidating genomic gaps using phenotypic profiles

Forest Rohwer, Veronika Vonstein, Christopher S. Henry, 2014 .

Some of the most interesting CASP11 targets through the eyes of their authors

Victor Seguritan, Thomas S. Peat, Forest Rohwer, 2015, Proteins.

FastGroupII: A web-based bioinformatics platform for analyses of large 16S rDNA libraries

Forest Rohwer, Yanan Yu, Pat McNairnie, 2006, BMC Bioinformatics.

Gut DNA viromes of Malawian twins discordant for severe acute malnutrition

Forest Rohwer, Guoyan Zhao, Jeffrey I. Gordon, 2015, Proceedings of the National Academy of Sciences.

Going viral: next-generation sequencing applied to phage populations in the human gut

Forest Rohwer, Jeffrey I. Gordon, Katrine Whiteson, 2012, Nature Reviews Microbiology.

Can we measure beauty? Computational evaluation of coral reef aesthetics

Peter Salamon, Forest Rohwer, Ben Felts, 2015, PeerJ.

Viral and microbial community dynamics in four aquatic environments

Peter Salamon, Forest Rohwer, Florent E. Angly, 2010, The ISME Journal.

Baselines and Degradation of Coral Reefs in the Northern Line Islands

Nancy Knowlton, Forest Rohwer, Alan M. Friedlander, 2008, PloS one.

Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins

Peter Salamon, Forest Rohwer, Robert A. Edwards, 2015, Journal of visualized experiments : JoVE.

Mass spectral similarity for untargeted metabolomics data analysis of complex mixtures.

Forest Rohwer, Yan Wei Lim, Pieter C Dorrestein, 2015, International journal of mass spectrometry.

Structure and function of a cyanophage-encoded peptide deformylase

Robert A Edwards, Anca M Segall, Forest Rohwer, 2013, The ISME Journal.

Application of Finite-Time and Control Thermodynamics to Biological Processes at Multiple Scales

Bjarne Andresen, Peter Salamon, Forest Rohwer, 2018, Journal of Non-Equilibrium Thermodynamics.

Metagenomic analysis of the microbial community associated with the coral Porites astreoides.

Forest Rohwer, Beltran Rodriguez-Brito, Robert Edwards, 2007, Environmental microbiology.

Global Phage Diversity

Forest Rohwer, F. Rohwer, 2003, Cell.

Roles of viruses in the environment.

Forest Rohwer, David Prangishvili, D. Lindell, 2009, Environmental microbiology.

RNA Viral Community in Human Feces: Prevalence of Plant Pathogenic Viruses

Tao Zhang, Forest Rohwer, Mya Breitbart, 2005, PLoS biology.

Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition

Forest Rohwer, Bas E. Dutilh, Robert A. Edwards, 2014, PeerJ.

Global distribution of nearly identical phage-encoded DNA sequences.

Forest Rohwer, Mya Breitbart, M. Breitbart, 2004, FEMS microbiology letters.

Viruses as Winners in the Game of Life.

Forest Rohwer, Ben Felts, James Nulton, 2016, Annual review of virology.

Spatial Molecular Architecture of the Microbial Community of a Peltigera Lichen

Forest Rohwer, Pavel A. Pevzner, Pieter C. Dorrestein, 2016, mSystems.

Coral Reefs in the Microbial Seas

Forest Rohwer, Merry Youle, F. Rohwer, 2010 .

Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity

Forest Rohwer, Robert Schmieder, Florent E. Angly, 2010, Proceedings of the National Academy of Sciences.

Erratum: Functional metagenomic profiling of nine biomes

Rick Stevens, David L. Valentine, Forest Rohwer, 2008 .

Viruses in the fecal microbiota of monozygotic twins and their mothers

Forest Rohwer, Florent E. Angly, Andrew C. Heath, 2010, Nature.

In retrospect: A century of phage lessons

Forest Rohwer, Anca M. Segall, F. Rohwer, 2015, Nature.

Challenging the state of the art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10

Marco Biasini, Victor Seguritan, Forest Rohwer, 2014, Proteins.

The Airborne Metagenome in an Indoor Urban Environment

Tao Zhang, Forest Rohwer, Susannah G. Tringe, 2008, PloS one.

Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung.

Nuno Bandeira, Forest Rohwer, Rob Knight, 2017, Cell host & microbe.

Metagenomic Analysis of Respiratory Tract DNA Viral Communities in Cystic Fibrosis and Non-Cystic Fibrosis Individuals

Forest Rohwer, Robert Schmieder, Florent E. Angly, 2009, PloS one.

Here a virus, there a virus, everywhere the same virus?

Forest Rohwer, Mya Breitbart, M. Breitbart, 2005, Trends in microbiology.

Metagenomic and Small-Subunit rRNA Analyses Reveal the Genetic Diversity of Bacteria, Archaea, Fungi, and Viruses in Soil

Peter Salamon, Forest Rohwer, Rob Knight, 2007, Applied and Environmental Microbiology.

Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung.

Forest Rohwer, Robert Schmieder, Yan Wei Lim, 2012, American journal of respiratory cell and molecular biology.

Photosystem I gene cassettes are present in marine virus genomes

Ron Y. Pinter, Forest Rohwer, Fabian Glaser, 2009, Nature.

Role of Elevated Organic Carbon Levels and Microbial Activity in Coral Mortality

Nancy Knowlton, Forest Rohwer, Mya Breitbart, 2006 .

Laboratory procedures to generate viral metagenomes

Forest Rohwer, Mya Breitbart, Matthew Haynes, 2009, Nature Protocols.

Re-evaluating the health of coral reef communities: baselines and evidence for human impacts across the central Pacific

Forest Rohwer, Clinton Edwards, Stuart Sandin, 2016, Proceedings of the Royal Society B: Biological Sciences.

Coral health index (CHI) : measuring coral community health

Forest Rohwer, Les Kaufman, Enric Sala, 2011 .

Hyperspectral and Physiological Analyses of Coral-Algal Interactions

Forest Rohwer, Stuart Sandin, Katie Barott, 2009, PloS one.

Spatial distribution of microbial communities in the cystic fibrosis lung

Forest Rohwer, Robert Schmieder, Yan Wei Lim, 2011, The ISME Journal.

Biogeochemical Forces Shape the Composition and Physiology of Polymicrobial Communities in the Cystic Fibrosis Lung

Forest Rohwer, Yan Wei Lim, Robert A. Quinn, 2014, mBio.

Multilevel Research Strategies and Biological Systems

Forest Rohwer, Rob Knight, Alan C. Love, 2014, Philosophy of Science.

Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas, Mexico.

Forest Rohwer, Mya Breitbart, Valeria Souza, 2009, Environmental microbiology.

Metagenomic Analysis of Lysogeny in Tampa Bay: Implications for Prophage Gene Expression

Amy Long, Forest Rohwer, Mya Breitbart, 2008, PloS one.

Unraveling the Unseen Players in the Ocean - A Field Guide to Water Chemistry and Marine Microbiology

Forest Rohwer, Yan Wei Lim, Ben Knowles, 2014, Journal of visualized experiments : JoVE.

Development and Use of Personalized Bacteriophage-Based Therapeutic Cocktails To Treat a Patient with a Disseminated Resistant Acinetobacter baumannii Infection

Forest Rohwer, Kimberly A. Bishop-Lilly, Katherine E. Cilwa, 2017, Antimicrobial Agents and Chemotherapy.