Matteo Dal Peraro

发表

Will Cryo-Electron Microscopy Shift the Current Paradigm in Protein Structure Prediction?

Luciano A. Abriata, Matteo Dal Peraro, 2020, J. Chem. Inf. Model..

Development of a chemical-detailed coarse-grained force field for proteins

Michele Cascella, Matteo Dal Peraro, Davide Alemani, 2011 .

Detection and sequence/structure mapping of biophysical constraints to protein variation in saturated mutational libraries and protein sequence alignments with a dedicated server

Luciano A. Abriata, Matteo Dal Peraro, Christophe Bovigny, 2016, BMC Bioinformatics.

On the active site of mononuclear B1 metallo β-lactamases: a computational study

Alessandra Magistrato, Matteo Dal Peraro, Paolo Carloni, 2012, Journal of Computer-Aided Molecular Design.

One Constraint at a Time: Using Viability Principles in Integrative Modeling of Macromolecular Assemblies

Dario Floreano, Matteo Dal Peraro, Matteo T. Degiacomi, 2017 .

Topologically Based Multipolar Reconstruction of Electrostatic Interactions in Multiscale Simulations of Proteins.

Michele Cascella, Matteo Dal Peraro, Paolo Carloni, 2008, Journal of chemical theory and computation.

Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop.

Haruki Nakamura, Jens Meiler, Ruth Nussinov, 2015, Structure.

Aerolysin nanopores decode digital information stored in tailored macromolecular analytes

Matteo Dal Peraro, Jean-François Lutz, Aleksandra Radenovic, 2020, Science Advances.

Coarse-graining electrostatics in multiscale molecular simulations

Matteo Dal Peraro, Davide Alemani, Francesca Collu, 2010 .

State-of-the-art web services for de novo protein structure prediction

Luciano A. Abriata, Matteo Dal Peraro, L. Abriata, 2020, Briefings Bioinform..

Electrostatic-Consistent Coarse-Grained Potentials for Molecular Simulations of Proteins.

Michele Cascella, Matteo Dal Peraro, Davide Alemani, 2013, Journal of chemical theory and computation.

Assembly and function of large Gram-negative bacterial machines studied by molecular simulation integrated with experimental data

Matteo Dal Peraro, 2010 .

Assembly of the Transmembrane Domain of E. coli PhoQ Histidine Kinase: Implications for Signal Transduction from Molecular Simulations

Matteo Dal Peraro, William F. DeGrado, Cinque S. Soto, 2013, PLoS Comput. Biol..

LipidBuilder: A Framework To Build Realistic Models for Biological Membranes

Matteo Dal Peraro, Thomas Lemmin, Christophe Bovigny, 2015, J. Chem. Inf. Model..

About the need to make computational models of biological macromolecules available and discoverable

Luciano A. Abriata, Matteo Dal Peraro, Rosalba Lepore, 2020, Bioinform..

Crystal structure of Hop2–Mnd1 and mechanistic insights into its role in meiotic recombination

Christopher P. Toseland, Matteo Dal Peraro, Byung-Ha Oh, 2015, Nucleic acids research.

Pore-forming toxins: ancient, but never really out of fashion

Matteo Dal Peraro, F. Gisou van der Goot, F. Goot, 2015, Nature Reviews Microbiology.

Challenges and Perspectives in Biomolecular Simulations : From the Atomistic Picture to Multiscale Modeling

Matteo Dal Peraro, Michele Cascella, M. Cascella, 2009 .

Molecular dynamics calculations suggest a conduction mechanism for the M2 proton channel from influenza A virus

Matteo Dal Peraro, Satyavani Vemparala, Russell DeVane, 2009, Proceedings of the National Academy of Sciences.

Evolution of Acid-Sensing Olfactory Circuits in Drosophilids

Matteo Dal Peraro, Steeve Cruchet, Richard Benton, 2017, Neuron.