Aedín C. Culhane

发表

Optimized between-group classification: a new jackknife-based gene selection procedure for genome-wide expression data

Florent Baty, Michel P. Bihl, Guy Perrière, 2005, BMC Bioinformatics.

survcomp: an R/Bioconductor package for performance assessment and comparison of survival models

Aedín C. Culhane, Benjamin Haibe-Kains, John Quackenbush, 2011, Bioinform..

Enter the matrix: Interpreting unsupervised feature learning with matrix decomposition to discover hidden knowledge in high-throughput omics data

Aedín C. Culhane, Casey S. Greene, Raman Arora, 2017, bioRxiv.

Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data

Ian B. Jeffery, Aedín C. Culhane, Desmond G. Higgins, 2006, BMC Bioinformatics.

Algorithms for gene expression analysis

Aedín C. Culhane, Alvis Brazma, A. Brazma, 2005 .

Dimension reduction techniques for the integrative analysis of multi-omics data

Aedín C. Culhane, Chen Meng, Gerhard G. Thallinger, 2016, Briefings Bioinform..

Cross-platform comparison and visualisation of gene expression data using co-inertia analysis

Guy Perrière, Aedín C. Culhane, Desmond G. Higgins, 2003, BMC Bioinformatics.

Enter the matrix: factorization uncovers knowledge from omics Names/Affiliations

Aedín C. Culhane, Casey S. Greene, Raman Arora, 2018 .

Expression Profiler: next generation - an online platform for analysis of microarray data

Aedín C. Culhane, Meelis Kull, Aurora Torrente, 2004, Nucleic Acids Res..

Buehler LK, Rashidi HH: Bioinformatics Basics: Applications in Biological Science and Medicine

Aedín C. Culhane, 2006 .

iBBiG: iterative binary bi-clustering of gene sets

Aedín C. Culhane, Eleanor Howe, John Quackenbush, 2012, Bioinform..

A multivariate approach to the integration of multi-omics datasets

Aedín C. Culhane, Chen Meng, Amin Moghaddas Gholami, 2014, BMC Bioinformatics.

RamiGO: an R/Bioconductor package providing an AmiGO Visualize interface

Aedín C. Culhane, Benjamin Haibe-Kains, John Quackenbush, 2013, Bioinform..

P28: Advanced image analysis of immunohistochemistry on tumour specimens

Aedín C. Culhane, Elton Rexhepaj, William M. Gallagher, 2009 .

GeneSigDB: a manually curated database and resource for analysis of gene expression signatures

Aedín C. Culhane, Benjamin Haibe-Kains, John Quackenbush, 2011, Nucleic Acids Res..

AI Methods for Analyzing Microarray Data

Aedín C. Culhane, John Quackenbush, Amira Djebbari, 2009, Encyclopedia of Artificial Intelligence.

Public data and open source tools for multi-assay genomic investigation of disease

Aedín C. Culhane, David Gomez-Cabrero, Zhaleh Safikhani, 2015, Briefings Bioinform..

Significance Analysis of Prognostic Signatures

Benjamin Haibe-Kains, Aedín C. Culhane, Andrew H. Beck, 2013, PLoS Comput. Biol..

Integrating transcription factor binding site information with gene expression datasets

Ian B. Jeffery, Guy Perrière, Aedín C. Culhane, 2007, Bioinform..

MADE4: an R package for multivariate analysis of gene expression data

Guy Perrière, Aedín C. Culhane, Jean Thioulouse, 2005, Bioinform..

GeneSigDB—a curated database of gene expression signatures

Aedín C. Culhane, John Quackenbush, Mick Correll, 2009, Nucleic Acids Res..

Gene Expression Atlas update—a value-added database of microarray and sequencing-based functional genomics experiments

Aedín C. Culhane, Robert Petryszak, James Malone, 2011, Nucleic Acids Res..

Software for the integration of multi-omics experiments in Bioconductor

Aedín C. Culhane, David Gomez-Cabrero, Benjamin Haibe-Kains, 2017 .

Between-group analysis of microarray data

Guy Perrière, Aedín C. Culhane, Desmond G. Higgins, 2002, Bioinform..

The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons

Oliver Hofmann, Aedín C. Culhane, Shannan J. Ho Sui, 2011, Nucleic Acids Res..

MOGSA: Integrative Single Sample Gene-set Analysis of Multiple Omics Data

Aedín C. Culhane, Bjoern Peters, Bernhard Kuster, 2016, Molecular & Cellular Proteomics.