Ivo F. Sbalzarini

发表

Learning physically consistent mathematical models from data using group sparsity pdf

Suryanarayana Maddu, Bevan L. Cheeseman, Christian L. Müller, 2020, ArXiv.

A domain-specific programming language for particle simulations on distributed-memory parallel computers

Ivo F. Sbalzarini, Omar Awile, Milan Mitrovic, 2013 .

Analysis, modeling, and simulation of diffusion processes in cell biology

Ivo F. Sbalzarini, I. Sbalzarini, 2006 .

pCMALib - Manual for version 1.0

Ivo F. Sbalzarini, Georg Ofenbeck, Benedikt Baumgartner, 2010 .

Beyond co-localization: inferring spatial interactions between sub-cellular structures from microscopy images

Ivo F. Sbalzarini, Jo A. Helmuth, Grégory Paul, 2010, BMC Bioinformatics.

Gaussian Adaptation Revisited - An Entropic View on Covariance Matrix Adaptation

Christian L. Müller, Ivo F. Sbalzarini, 2010, EvoApplications.

A Parallel Distributed-Memory Particle Method Enables Acquisition-Rate Segmentation of Large Fluorescence Microscopy Images

Ivo F. Sbalzarini, Yaser Afshar, I. Sbalzarini, 2016, PloS one.

Bionic Tracking: Using Eye Tracking to Track Biological Cells in Virtual Reality pdf

Ivo F. Sbalzarini, Raimund Dachselt, Ulrik Günther, 2020, ECCV Workshops.

An adaptive distributed resampling algorithm with non-proportional allocation

Ivo F. Sbalzarini, Wiro J. Niessen, Erik H. W. Meijering, 2014, 2014 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

A Natural-Scene Gradient Distribution Prior and its Application in Light-Microscopy Image Processing

Ivo F. Sbalzarini, Yuanhao Gong, I. Sbalzarini, 2016, IEEE Journal of Selected Topics in Signal Processing.

Coupling Image Restoration and Segmentation: A Generalized Linear Model/Bregman Perspective

Ivo F. Sbalzarini, Grégory Paul, Janick Cardinale, 2013, International Journal of Computer Vision.

OpenFPM: A scalable open framework for particle and particle-mesh codes on parallel computers pdf

Ivo F. Sbalzarini, Pietro Incardona, Antonio Leo, 2018, Comput. Phys. Commun..

Microchannel Optimization Using Multiobjective Evolution Strategies

Ivo F. Sbalzarini, Petros Koumoutsakos, Sibylle D. Müller, 2001, EMO.

PPF - A Parallel Particle Filtering Library pdf

Ivo F. Sbalzarini, Wiro J. Niessen, Erik H. W. Meijering, 2013, ArXiv.

Evolution strategies for computational and experimental Fluid Dynamic applications

Ivo F. Sbalzarini, Petros Koumoutsakos, Sibylle D. Müller, 2001 .

A Tunable Real-world Multi-funnel Benchmark Problem for Evolutionary Optimization - And Why Parallel Island Models Might Remedy the Failure of CMA-ES on It

Christian L. Müller, Ivo F. Sbalzarini, I. Sbalzarini, 2018, IJCCI.

OMEGA: a software tool for the management, analysis, and dissemination of intracellular trafficking data that incorporates motion type classification and quality control

Ivo F. Sbalzarini, Tiziano Leidi, Jeremy Luban, 2018, bioRxiv.

Image Enhancement by Gradient Distribution Specification

Ivo F. Sbalzarini, Yuanhao Gong, I. Sbalzarini, 2014, ACCV Workshops.

Fast Interpolation and Fourier Transform in High-Dimensional Spaces

Ivo F. Sbalzarini, Michael Hecht, I. Sbalzarini, 2018, Advances in Intelligent Systems and Computing.

A robustness measure for singular point and index estimation in discretized orientation and vector fields pdf

Ivo F. Sbalzarini, Karl B. Hoffmann, 2020, ArXiv.

Gaussian Adaptation as a unifying framework for continuous black-box optimization and adaptive Monte Carlo sampling

Christian L. Müller, Ivo F. Sbalzarini, 2010, IEEE Congress on Evolutionary Computation.

Exact stochastic simulations of intra-cellular transport by mechanically coupled molecular motors

Ivo F. Sbalzarini, Sylvain Reboux, Jo A. Helmuth, 2011, J. Comput. Sci..

Balancing indivisible real-valued loads in arbitrary networks pdf

Ivo F. Sbalzarini, Ömer Demirel, I. Sbalzarini, 2013, ArXiv.

Abstractions and Middleware for Petascale Computing and Beyond

Ivo F. Sbalzarini, I. Sbalzarini, 2010, Int. J. Distributed Syst. Technol..

Global Suppressor Mutations (GSM) in terms of structural and physico-chemical properties and implications for future projects

Ivo F. Sbalzarini, Yannick Misteli, I. Sbalzarini, 2008 .

Multivariate Newton Interpolation

Bevan L. Cheeseman, Ivo F. Sbalzarini, Michael Hecht, 2018, 1812.04256.

Large‐scale parallel discrete element simulations of granular flow

Ivo F. Sbalzarini, Jens Honore Walther, I. Sbalzarini, 2009 .

Towards an FCA-based Recommender System for Black-Box Optimization

Ivo F. Sbalzarini, Dirk Walther, Daniel Borchmann, 2014, ECAI 2014.

An alternating split Bregman algorithm for multi-region segmentation

Ivo F. Sbalzarini, Grégory Paul, Janick Cardinale, 2011, 2011 Conference Record of the Forty Fifth Asilomar Conference on Signals, Systems and Computers (ASILOMAR).

A hybrid particle-mesh method for incompressible active polar viscous gels

Ivo F. Sbalzarini, Frank Jülicher, George Bourantas, 2015, J. Comput. Phys..

Discrete Region Competition for Unknown Numbers of Connected Regions

Ivo F. Sbalzarini, Grégory Paul, Janick Cardinale, 2012, IEEE Transactions on Image Processing.

A Meshless Particle Method for Poisson and Diffusion Problems with Discontinuous Coefficients and Inhomogeneous Boundary Conditions

Ivo F. Sbalzarini, Ömer Demirel, Nicolas Fiétier, 2013, SIAM J. Sci. Comput..

Gradient Distribution Priors for Biomedical Image Processing pdf

Ivo F. Sbalzarini, Yuanhao Gong, I. Sbalzarini, 2014, ArXiv.

Statistical analysis of fitness values in CMA-ES

Ivo F. Sbalzarini, Grégory Paul, I. Sbalzarini, 2009 .

Lp-Adaptation: Simultaneous Design Centering and Robustness Estimation of Electronic and Biological Systems

Christian L. Müller, Ivo F. Sbalzarini, Josefine Asmus, 2017, Scientific Reports.

Receptor Concentration and Diffusivity Control Multivalent Binding of Sv40 to Membrane Bilayers

Ivo F. Sbalzarini, Daniel Choquet, Vahid Sandoghdar, 2013, PLoS Comput. Biol..

A Proposed Framework for Interactive Virtual Reality In Situ Visualization of Parallel Numerical Simulations

Ivo F. Sbalzarini, Raimund Dachselt, Stefan Gumhold, 2019, 2019 IEEE 9th Symposium on Large Data Analysis and Visualization (LDAV).

General Terms: Algorithms, Languages, Performance, Standardization Additional Key Words and Phrases: POSIX threads, pthreads, Fortran, Fortran 2003, scientific computing, shared-memory programming, mathematical software, parallel particle-mesh, PPM library

Ivo F. Sbalzarini, Omar Awile, 2014 .

Bayesian image analysis with on-line confidence estimates and its application to microtubule tracking

Gábor Székely, Ivo F. Sbalzarini, Alexander Rauch, 2009, 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Particle Swarm CMA Evolution Strategy for the optimization of multi-funnel landscapes

Christian L. Müller, Ivo F. Sbalzarini, Benedikt Baumgartner, 2009, 2009 IEEE Congress on Evolutionary Computation.

MosaicIA: an ImageJ/Fiji plugin for spatial pattern and interaction analysis

Ivo F. Sbalzarini, Aleksandra Radenovic, Arun Shivanandan, 2013, BMC Bioinformatics.

Global parameter identification of stochastic reaction networks from single trajectories

Christian L. Müller, Ivo F. Sbalzarini, Rajesh Ramaswamy, 2011, Advances in experimental medicine and biology.

Energy Landscapes of Atomic Clusters as Black Box Optimization Benchmarks

Christian L. Müller, Ivo F. Sbalzarini, I. Sbalzarini, 2012, Evolutionary Computation.

Advances in Numerical Methods for Stochastic Simulation

Ivo F. Sbalzarini, Hong Li, I. Sbalzarini, 2010 .

STENCIL-NET: Data-driven solution-adaptive discretization of partial differential equations pdf

Suryanarayana Maddu, Bevan L. Cheeseman, Christian L. Müller, 2021, ArXiv.

pCMALib: a parallel fortran 90 library for the evolution strategy with covariance matrix adaptation

Christian L. Müller, Ivo F. Sbalzarini, Georg Ofenbeck, 2009, GECCO '09.

A Language and Development Environment for Parallel Particle Methods

Ivo F. Sbalzarini, Peter Wriggers, Jeronimo Castrillon, 2017 .

A Domain-Specific Language and Editor for Parallel Particle Methods

Ivo F. Sbalzarini, Jerónimo Castrillón, Tobias Nett, 2018, ACM Trans. Math. Softw..

Machine Learning for Biological Trajectory Classification Applications

Ivo F. Sbalzarini, Petros Koumoutsakos, Julie Theriot, 2002 .

Global Characterization of the CEC 2005 Fitness Landscapes Using Fitness-Distance Analysis

Christian L. Müller, Ivo F. Sbalzarini, I. Sbalzarini, 2011, EvoApplications.

scenery: Flexible Virtual Reality Visualization on the Java VM

Ivo F. Sbalzarini, Stefan Gumhold, Tobias Pietzsch, 2019, 2019 IEEE Visualization Conference (VIS).

Local weighted Gaussian curvature for image processing

Ivo F. Sbalzarini, Yuanhao Gong, I. Sbalzarini, 2013, 2013 IEEE International Conference on Image Processing.

Intrinsically Disordered Regions May Lower the Hydration Free Energy in Proteins: A Case Study of Nudix Hydrolase in the Bacterium Deinococcus radiodurans

Ivo F. Sbalzarini, Omar Awile, Bojan Zagrovic, 2010, PLoS Comput. Biol..

Coupled signed-distance functions for implicit surface reconstruction

Ivo F. Sbalzarini, Yuanhao Gong, Grégory Paul, 2012, 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI).

Fast neighbor lists for adaptive-resolution particle simulations

Ivo F. Sbalzarini, Omar Awile, Sylvain Reboux, 2012, Comput. Phys. Commun..

Approximate Sequential Importance Sampling for Fast Particle Filtering

Ivo F. Sbalzarini, Erik Meijering, Wiro J. Niessen, 2013 .

Curvature Filters Efficiently Reduce Certain Variational Energies

Ivo F. Sbalzarini, Yuanhao Gong, I. Sbalzarini, 2017, IEEE Transactions on Image Processing.

Balanced offline allocation of weighted balls into bins pdf

Ivo F. Sbalzarini, Ömer Demirel, I. Sbalzarini, 2013, ArXiv.

A portable OpenCL implementation of generic particle-mesh and mesh-particle interpolation in 2D and 3D

Ivo F. Sbalzarini, Omar Awile, Ferit Büyükkeçeci, 2013, Parallel Comput..

A Software Framework for the Portable Parallelization of Particle-Mesh Simulations

Ivo F. Sbalzarini, Michael Bergdorf, Petros Koumoutsakos, 2006, Euro-Par.

A Pthreads Wrapper for Fortran 2003

Ivo F. Sbalzarini, Omar Awile, 2014, ACM Trans. Math. Softw..

Stability selection enables robust learning of partial differential equations from limited noisy data pdf

Suryanarayana Maddu, Christian L. Müller, Ivo F. Sbalzarini, 2019, ArXiv.

Choosing the Best Kernel: Performance Models for Diffusion Operators in Particle Methods

Ivo F. Sbalzarini, Sylvain Reboux, Birte Schrader, 2012, SIAM J. Sci. Comput..

PPM - A highly efficient parallel particle-mesh library for the simulation of continuum systems

Ivo F. Sbalzarini, Michael Bergdorf, Petros Koumoutsakos, 2006, J. Comput. Phys..

Robust Mapping of Process Networks to Many-Core Systems using Bio-Inspired Design Centering

Ivo F. Sbalzarini, Gerald Hempel, Andrés Goens, 2017, SCOPES.

Informatik und Biologie - Eine Symbiose ermöglicht neue Entdeckungen

Ivo F. Sbalzarini, 2006 .

pSSAlib: The partial-propensity stochastic chemical network simulator

Ivo F. Sbalzarini, Lutz Brusch, Pietro Incardona, 2017, PLoS Comput. Biol..

Discretization correction of general integral PSE Operators for particle methods

Ivo F. Sbalzarini, Sylvain Reboux, Birte Schrader, 2010, J. Comput. Phys..

A self-organizing Lagrangian particle method for adaptive-resolution advection-diffusion simulations

Ivo F. Sbalzarini, Sylvain Reboux, Birte Schrader, 2012, J. Comput. Phys..

Deconvolving Active Contours for Fluorescence Microscopy Images

Ivo F. Sbalzarini, Jo A. Helmuth, I. Sbalzarini, 2009, ISVC.

Particle methods enable fast and simple approximation of Sobolev gradients in image segmentation pdf

Ivo F. Sbalzarini, Janick Cardinale, Sophie Schneider, 2014, ArXiv.

Toward an Object-Oriented Core of the PPM Library

Ivo F. Sbalzarini, Omar Awile, Ömer Demirel, 2010 .

Piecewise Constant Sequential Importance Sampling for Fast Particle Filtering pdf

Ivo F. Sbalzarini, Wiro J. Niessen, Erik H. W. Meijering, 2013, ArXiv.

Towards a Next-Generation Parallel Particle-Mesh Language.

Ivo F. Sbalzarini, Jeronimo Castrillon, Yaser Afshar, 2015, ECOOP 2015.

Automatic optimal filament segmentation with sub-pixel accuracy using generalized linear models and B-spline level-sets

Ivo F. Sbalzarini, Xun Xiao, Jonathon Howard, 2016, Medical Image Anal..

An Architecture for Interactive In Situ Visualization and its Transparent Implementation in OpenFPM

Ivo F. Sbalzarini, Stefan Gumhold, Pietro Incardona, 2020 .

Forget Pixels: Adaptive Particle Representation of Fluorescence Microscopy Images

Bevan L. Cheeseman, Ivo F. Sbalzarini, Krzysztof Gonciarz, 2018, bioRxiv.

Big-Data Analytics transformiert die Lebenswissenschaften

Ivo F. Sbalzarini, I. F. Sbalzarini, 2019, Informatik Spektrum.

Inverse Dirichlet weighting enables reliable training of physics informed neural networks pdf

Suryanarayana Maddu, Christian L. Müller, Ivo F. Sbalzarini, 2021, Mach. Learn. Sci. Technol..

Model-based autotuning of discretization methods in numerical simulations of partial differential equations

Ivo F. Sbalzarini, Jeronimo Castrillon, Pietro Incardona, 2021, J. Comput. Sci..

Learning physically consistent differential equation models from data using group sparsity.

Suryanarayana Maddu, Bevan L. Cheeseman, Christian L. Müller, 2021, Physical review. E.

A Mathematical Definition of Particle Methods pdf

Ivo F. Sbalzarini, Johannes Bamme, I. Sbalzarini, 2021, ArXiv.

The OpenPME Problem Solving Environment for Numerical Simulations

Ivo F. Sbalzarini, Lars Schütze, Pietro Incardona, 2021, ICCS.

Biggs Theorem for Directed Cycles and Topological Invariants of Digraphs

Ivo F. Sbalzarini, Michael Hecht, I. Sbalzarini, 2021, Advances in Pure Mathematics.

Distributed Sparse Block Grids on GPUs

Ivo F. Sbalzarini, Pietro Incardona, Tommaso Bianucci, 2021, ISC.

Learning deterministic hydrodynamic equations from stochastic active particle dynamics

Suryanarayana Maddu, Ivo F. Sbalzarini, Quentin Vagne, 2022, ArXiv.

Encoding Priors with Group Sparsity for Model Learning From Limited and Noisy Biological Data

Suryanarayana Maddu, Bevan L. Cheeseman, Ivo F. Sbalzarini, 2021 .

A robustness measure for singular point and index estimation in discretized orientation and vector fields pdf

Ivo F. Sbalzarini, Karl B. Hoffmann, 2021, PAMM.

Parallel Discrete Convolutions on Adaptive Particle Representations of Images pdf

Suryanarayana Maddu, Bevan L. Cheeseman, Ivo F. Sbalzarini, 2021, IEEE Transactions on Image Processing.

An algorithm-centric Monte Carlo method to empirically quantify motion type estimation uncertainty in single-particle tracking

Ivo F. Sbalzarini, Krzysztof Gonciarz, Alessandro Rigano, 2018, bioRxiv.

Fast Exact Stochastic Simulation Algorithms Using Partial Propensities

Ivo F. Sbalzarini, Rajesh Ramaswamy, 2010 .

Self-organized shape dynamics of active surfaces

Ivo F. Sbalzarini, Frank Jülicher, I. Sbalzarini, 2018, Proceedings of the National Academy of Sciences.

Thermophoretic motion of water nanodroplets confined inside carbon nanotubes.

Ivo F. Sbalzarini, Petros Koumoutsakos, P. Koumoutsakos, 2009, Nano letters.

Noise-Induced Modulation of the Relaxation Kinetics around a Non-Equilibrium Steady State of Non-Linear Chemical Reaction Networks

Ivo F. Sbalzarini, Rajesh Ramaswamy, Nélido González-Segredo, 2011, PloS one.

Intrinsic noise alters the frequency spectrum of mesoscopic oscillatory chemical reaction systems

Ivo F. Sbalzarini, Rajesh Ramaswamy, I. Sbalzarini, 2011, Scientific reports.

Antimicrobial Peptides Induce Growth of Phosphatidylglycerol Domains in a Model Bacterial Membrane

Ivo F. Sbalzarini, Roman G. Efremov, Rajesh Ramaswamy, 2010 .