France Denoeud

Identification of polymorphic tandem repeats by direct comparison of genome sequence from different bacterial strains : a web-based resource

Gilles Vergnaud, France Denoeud, F. Denoeud, 2004, BMC Bioinformatics.

High resolution, on-line identification of strains from the Mycobacterium tuberculosis complex based on tandem repeat typing

Gilles Vergnaud, France Denoeud, Michel Fabre, 2002, BMC Microbiology.

Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis

Bernard Henrissat, Stefano Ghignone, Hadi Quesneville, 2010, Nature.

Efficient targeted transcript discovery via array-based normalization of RACE libraries

Sylvain Foissac, Philipp Kapranov, Thomas R. Gingeras, 2008, Nature Methods.

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes

Kun Lu, Xun Xu, Jianxin Ma, 2014, Nature Communications.

The implications of alternative splicing in the ENCODE protein complement

Hagen Blankenburg, Fidel Ramírez, Thomas Lengauer, 2007, Proceedings of the National Academy of Sciences.

Plasticity of Animal Genome Architecture Unmasked by Rapid Evolution of a Pelagic Tunicate

Frédéric Delsuc, Boris Lenhard, Hans Lehrach, 2010, Science.

Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution.

Philipp Kapranov, Jennifer Harrow, Roderic Guigó, 2007, Genome research.