Eyal Akiva

发表

Preferential use of protein domain pairs as interaction mediators: order and transitivity

Zohar Itzhaki, Eyal Akiva, Hanah Margalit, 2010, Bioinform..

Metagenomics and sequence similarity networks expose cryptic sequence space to enable enzyme discovery and enhance engineering strategies

Eyal Akiva, Janine N. Copp, Patsy Babbitt, 2017 .

Evaluating Functional Annotations of Enzymes Using the Gene Ontology

Patricia C. Babbitt, Eyal Akiva, Gemma L. Holliday, 2018, Methods in molecular biology.

The Structure–Function Linkage Database

Michael A. Hicks, John H. Morris, Conrad C. Huang, 2013, Nucleic Acids Res..

Prediction of Mutational Tolerance in HIV-1 Protease and Reverse Transcriptase Using Flexible Backbone Protein Design

Eyal Akiva, Tanja Kortemme, Shane Ó Conchúir, 2012, PLoS Comput. Biol..

Global landscape of HIV–human protein complexes

John H. Morris, Tom Alber, Eyal Akiva, 2011, Nature.

A Dynamic View of Domain-Motif Interactions

Zohar Itzhaki, Eyal Akiva, Hanah Margalit, 2012, PLoS Comput. Biol..

Biocuration in the structure–function linkage database: the anatomy of a superfamily

Michael A. Hicks, John H. Morris, Conrad C. Huang, 2017, Database J. Biol. Databases Curation.

A global view of structure–function relationships in the tautomerase superfamily

Eyal Akiva, Gemma L. Holliday, Patricia C Babbitt, 2017, The Journal of Biological Chemistry.

Evolutionary conservation of domain-domain interactions

Zohar Itzhaki, Eyal Akiva, Hanah Margalit, 2006, Genome Biology.

Exploring the sequence, function, and evolutionary space of protein superfamilies using sequence similarity networks and phylogenetic reconstructions.

Eyal Akiva, Janine N Copp, Patricia C Babbitt, 2019, Methods in enzymology.

Prediction and characterization of enzymatic activities guided by sequence similarity and genome neighborhood networks

Eyal Akiva, Matthew P Jacobson, Suwen Zhao, 2014, eLife.

[FeFe]-hydrogenase maturation: insights into the role HydE plays in dithiomethylamine biosynthesis.

Eyal Akiva, Gemma L. Holliday, Patricia C Babbitt, 2015, Biochemistry.

Large-Scale Determination of Sequence, Structure, and Function Relationships in Cytosolic Glutathione Transferases across the Biosphere

Richard N. Armstrong, Patricia C. Babbitt, Eyal Akiva, 2014, PLoS biology.

Biocuration in the structure–function linkage database: the anatomy of a superfamily

Conrad C. Huang, Thomas E. Ferrin, Elaine C. Meng, 2017, Database : the journal of biological databases and curation.

Atlas of the Radical SAM Superfamily: Divergent Evolution of Function Using a "Plug and Play" Domain.

Ursula Pieper, Eyal Akiva, Gemma L. Holliday, 2018, Methods in enzymology.

Evolutionary and molecular foundations of multiple contemporary functions of the nitroreductase superfamily

Patricia C. Babbitt, Eyal Akiva, Janine N. Copp, 2017, Proceedings of the National Academy of Sciences.