Birgit Eisenhaber

发表

Integrated tools for biomolecular sequence-based function prediction as exemplified by the ANNOTATOR software environment.

Georg Schneider, Michael Wildpaner, Fernanda L. Sirota, 2010, Methods in molecular biology.

Predicting Protein Function Using Homology-Based Methods

Birgit Eisenhaber, Swati Sinha, Andrew M. Lynn, 2018 .

TM or not TM: transmembrane protein prediction with low false positive rate using DAS-TMfilter

Birgit Eisenhaber, Frank Eisenhaber, István Simon, 2004, Bioinform..

Protein Sequence–Structure–Function–Network Links Discovered with the ANNOTATOR Software Suite: Application to ELYS/Mel-28

Fernanda L. Sirota, Sebastian Maurer-Stroh, Birgit Eisenhaber, 2012 .

HPMV: Human protein mutation viewer - relating sequence mutations to protein sequence architecture and function changes

Sebastian Maurer-Stroh, Birgit Eisenhaber, Frank Eisenhaber, 2015, J. Bioinform. Comput. Biol..

Biomolecular pathway databases.

Birgit Eisenhaber, Frank Eisenhaber, Hong Sain Ooi, 2010, Methods in molecular biology.

Beware of Moving targets: Reference proteome Content Fluctuates substantially over the Years

Fernanda L. Sirota, Sebastian Maurer-Stroh, Birgit Eisenhaber, 2012, J. Bioinform. Comput. Biol..

How bioinformatics influences health informatics: usage of biomolecular sequences, expression profiles and automated microscopic image analyses for clinical needs and public health

Hwee Kuan Lee, Sebastian Maurer-Stroh, Birgit Eisenhaber, 2013, Health Information Science and Systems.

SPACER: server for predicting allosteric communication and effects of regulation

Simon Mitternacht, Igor N. Berezovsky, Birgit Eisenhaber, 2013, Nucleic Acids Res..

Prediction of lipid posttranslational modifications and localization signals from protein sequences: big-, NMT and PTS1

Georg Schneider, Michael Wildpaner, Sebastian Maurer-Stroh, 2003, Nucleic Acids Res..

ANNIE: integrated de novo protein sequence annotation

Georg Schneider, Michael Wildpaner, Fernanda L. Sirota, 2009, Nucleic Acids Res..

The Recipe for Protein Sequence-Based Function Prediction and Its Implementation in the ANNOTATOR Software Environment.

Igor N. Berezovsky, Fernanda L. Sirota, Birgit Eisenhaber, 2016, Methods in molecular biology.

Databases of protein-protein interactions and complexes.

Birgit Eisenhaber, Frank Eisenhaber, Hong Sain Ooi, 2010, Methods in molecular biology.

Proteins with two SUMO-like domains in chromatin-associated complexes: The RENi (Rad60-Esc2-NIP45) family

Birgit Eisenhaber, Frank Eisenhaber, Maria Novatchkova, 2005, BMC Bioinformatics.

Hypocrisy Around Medical Patient Data: Issues of Access for Biomedical Research, Data Quality, Usefulness for the Purpose and Omics Data as Game Changer

Birgit Eisenhaber, Frank Eisenhaber, Wing-Cheong Wong, 2019, Asian bioethics review.

On the necessity of dissecting sequence similarity scores into segment-specific contributions for inferring protein homology, function prediction and annotation

Sebastian Maurer-Stroh, Birgit Eisenhaber, Frank Eisenhaber, 2014, BMC Bioinformatics.

Single‐residue posttranslational modification sites at the N‐terminus, C‐terminus or in‐between: To be or not to be exposed for enzyme access

Fernanda L. Sirota, Birgit Eisenhaber, Frank Eisenhaber, 2015, Proteomics.

Powerful Sequence Similarity Search Methods and In-Depth Manual Analyses Can Identify Remote Homologs in Many Apparently “Orphan” Viral Proteins

Birgit Eisenhaber, Westley A. Sherman, Georg Schneider, 2013, Journal of Virology.

Motif refinement of the peroxisomal targeting signal 1 and evaluation of taxon-specific differences.

Sebastian Maurer-Stroh, Birgit Eisenhaber, Frank Eisenhaber, 2003, Journal of molecular biology.

N-terminal N-myristoylation of proteins: prediction of substrate proteins from amino acid sequence.

Sebastian Maurer-Stroh, Birgit Eisenhaber, Frank Eisenhaber, 2002, Journal of molecular biology.

Glycosylphosphatidylinositol Lipid Anchoring of Plant Proteins. Sensitive Prediction from Sequence- and Genome-Wide Studies for Arabidopsis and Rice1

Michael Wildpaner, Birgit Eisenhaber, Frank Eisenhaber, 2003, Plant Physiology.

On filtering false positive transmembrane protein predictions.

Birgit Eisenhaber, Frank Eisenhaber, Istvan Simon, 2002, Protein engineering.

Enzymes and auxiliary factors for GPI lipid anchor biosynthesis and post-translational transfer to proteins.

Sebastian Maurer-Stroh, Birgit Eisenhaber, Frank Eisenhaber, 2003, BioEssays : news and reviews in molecular, cellular and developmental biology.

dissectHMMER: a HMMER-based score dissection framework that statistically evaluates fold-critical sequence segments for domain fold similarity

Birgit Eisenhaber, Frank Eisenhaber, Choon-Kong Yap, 2015, Biology Direct.

Prediction of sequence signals for lipid post‐translational modifications: Insights from case studies

Sebastian Maurer-Stroh, Birgit Eisenhaber, Frank Eisenhaber, 2004, Proteomics.

Prediction of peroxisomal targeting signal 1 containing proteins from amino acid sequence.

Sebastian Maurer-Stroh, Birgit Eisenhaber, Frank Eisenhaber, 2003, Journal of molecular biology.

Transamidase subunit GAA1/GPAA1 is a M28 family metallo-peptide-synthetase that catalyzes the peptide bond formation between the substrate protein’s omega-site and the GPI lipid anchor’s phosphoethanolamine

Birgit Eisenhaber, Frank Eisenhaber, Gerhard Grüber, 2014, Cell cycle.

Sequence complexity of proteins and its significance in annotation

Birgit Eisenhaber, Frank Eisenhaber, F. Eisenhaber, 2005 .

Prediction of posttranslational modification of proteins from their amino acid sequence.

Birgit Eisenhaber, Frank Eisenhaber, F. Eisenhaber, 2010, Methods in molecular biology.

N-terminal N-myristoylation of proteins: refinement of the sequence motif and its taxon-specific differences.

Sebastian Maurer-Stroh, Birgit Eisenhaber, Frank Eisenhaber, 2002, Journal of molecular biology.

Species specific membrane anchoring of nyctalopin, a small leucine-rich repeat protein.

Tao Wang, Birgit Eisenhaber, B. Eisenhaber, 2005, Human molecular genetics.

Protein function machinery: from basic structural units to modulation of activity.

Birgit Eisenhaber, Frank Eisenhaber, Zejun Zheng, 2017, Current opinion in structural biology.

Posttranslational modifications and subcellular localization signals: indicators of sequence regions without inherent 3D structure?

Birgit Eisenhaber, Frank Eisenhaber, F. Eisenhaber, 2007, Current protein & peptide science.

Charged residues next to transmembrane regions revisited: “Positive-inside rule” is complemented by the “negative inside depletion/outside enrichment rule”

Birgit Eisenhaber, Frank Eisenhaber, Jim Warwicker, 2017, BMC Biology.