Mihaela Pertea

发表

TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders

Steven Salzberg, William H. Majoros, Mihaela Pertea, 2004, Bioinform..

Efficient decoding algorithms for generalized hidden Markov model gene finders

Steven Salzberg, William H. Majoros, Arthur L. Delcher, 2005, BMC Bioinformatics.

Using Protein Domains to Improve the Accuracy of Ab Initio Gene Finding

Steven Salzberg, Mihaela Pertea, 2007, WABI.

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

Jeffrey T Leek, Steven L Salzberg, Mihaela Pertea, 2016, Nature Protocols.

OperonDB: a comprehensive database of predicted operons in microbial genomes

Steven Salzberg, Mihaela Pertea, Kunmi Ayanbule, 2008, Nucleic Acids Res..

GlimmerM, Exonomy and Unveil: three ab initio eukaryotic genefinders

Steven Salzberg, William H. Majoros, Corina Antonescu, 2003, Nucleic Acids Res..

A computational survey of candidate exonic splicing enhancer motifs in the model plant Arabidopsis thaliana

Steven Salzberg, Stephen M. Mount, Mihaela Pertea, 2007, BMC Bioinformatics.

A Method to Improve the Performance of Translation Start Site Detection and Its Application for Gene Finding

Steven Salzberg, Mihaela Pertea, 2002, WABI.

Detection of lineage-specific evolutionary changes among primate species

Steven Salzberg, Geo Pertea, Mihaela Pertea, 2011, BMC Bioinformatics.

Efficient implementation of a generalized pair hidden Markov model for comparative gene finding

William H. Majoros, Mihaela Pertea, Sihaela Salzberg, 2005, Bioinform..

GFF Utilities: GffRead and GffCompare

Geo Pertea, Mihaela Pertea, G. Pertea, 2020, F1000Research.

Transcriptome assembly from long-read RNA-seq alignments with StringTie2

Geo Pertea, Aleksey V. Zimin, Steven L. Salzberg, 2019, Genome Biology.

Problems and Solutions in Biological Sequence Analysis, Mark Borodovsky, Svetlana Ekisheva

Mihaela Pertea, 2008, Briefings Bioinform..

TieBrush: an efficient method for aggregating and summarizing mapped reads across large datasets

Geo Pertea, Christopher Pockrandt, Mihaela Pertea, 2021, Bioinform..

Using GlimmerM to Find Genes in Eukaryotic Genomes

Steven L Salzberg, Mihaela Pertea, S. Salzberg, 2003, Current protocols in bioinformatics.

Sim4cc: a cross-species spliced alignment program

Leming Zhou, Liliana Florea, Arthur L. Delcher, 2009, Nucleic acids research.

Bioinformatics: Finding genes in Plasmodium falciparum

Steven L. Salzberg, Mihaela Pertea, Malcolm J. Gardner, 2000, Nature.

Between a chicken and a grape: estimating the number of human genes

Steven L Salzberg, Mihaela Pertea, S. Salzberg, 2010, Genome Biology.

Between a chicken and a grape: estimating the number of human genes

Steven L Salzberg, Mihaela Pertea, S. Salzberg, 2010, Genome Biology.

Human contamination in bacterial genomes has created thousands of spurious proteins

Florian P Breitwieser, Steven L Salzberg, Mihaela Pertea, 2019, Genome research.

Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species.

Rod A Wing, Wei Zhu, Carol Soderlund, 2005, Genome research.

Transcriptome assembly from long-read RNA-seq alignments with StringTie2

Steven L Salzberg, Mihaela Pertea, Geo M Pertea, 2019, Genome biology.

Genome Sequence of Aedes aegypti, a Major Arbovirus Vector

Evgeny M. Zdobnov, Ian T. Paulsen, Jonathan Crabtree, 2007, Science.

The genome of the blood fluke Schistosoma mansoni

John P. Overington, Adhemar Zerlotini, Anna V. Protasio, 2009, Nature.

DIAMUND: Direct Comparison of Genomes to Detect Mutations

Steven L Salzberg, Mihaela Pertea, S. Salzberg, 2013, Human mutation.