Daniel-Adriano Silva

Application of Markov State Models to simulate long timescale dynamics of biological macromolecules.

Lin-Tai Da, Fu Kit Sheong, Daniel-Adriano Silva, 2014, Advances in experimental medicine and biology.

Quantitatively Characterizing the Ligand Binding Mechanisms of Choline Binding Protein Using Markov State Model Analysis

Shuo Gu, Daniel-Adriano Silva, Xuhui Huang, 2014, PLoS Comput. Biol..

A Role for Both Conformational Selection and Induced Fit in Ligand Binding by the LAO Protein

Daniel-Adriano Silva, Xuhui Huang, Gregory R. Bowman, 2011, PLoS Comput. Biol..

Automatic state partitioning for multibody systems (APM): an efficient algorithm for constructing Markov state models to elucidate conformational dynamics of multibody systems.

Fu Kit Sheong, Daniel-Adriano Silva, Yutong Zhao, 2015, Journal of chemical theory and computation.

Hierarchical Nyström methods for constructing Markov state models for conformational dynamics.

Yuan Yao, Daniel-Adriano Silva, Xuhui Huang, 2013, The Journal of chemical physics.

Structural Model of RNA Polymerase II Elongation Complex with Complete Transcription Bubble Reveals NTP Entry Routes

Dong Wang, Lu Zhang, Daniel-Adriano Silva, 2015, PLoS Comput. Biol..

Force field development for cofactors in the photosystem II

Lu Zhang, Daniel-Adriano Silva, Xuhui Huang, 2012, J. Comput. Chem..