Elizabeth J. Denning

发表

Impact of 2′‐hydroxyl sampling on the conformational properties of RNA: Update of the CHARMM all‐atom additive force field for RNA

Alexander D. MacKerell, Lennart Nilsson, U. Deva Priyakumar, 2011, J. Comput. Chem..

MDAnalysis: A toolkit for the analysis of molecular dynamics simulations

Oliver Beckstein, Thomas B. Woolf, Elizabeth J. Denning, 2011, J. Comput. Chem..

Optimization of the CHARMM additive force field for DNA: Improved treatment of the BI/BII conformational equilibrium.

Alexander D. MacKerell, Elizabeth J. Denning, N. Foloppe, 2012, Journal of chemical theory and computation.

Zipping and unzipping of adenylate kinase: atomistic insights into the ensemble of open<-->closed transitions.

Elizabeth J. Denning, T. Woolf, J. Perilla, 2009, Journal of molecular biology.

Cooperative nature of gating transitions in K+ channels as seen from dynamic importance sampling calculations

Elizabeth J. Denning, T. Woolf, 2010, Proteins.

The Closed Open Transition of Adenylate Kinase From Crystal Structures and Computer Simulations

Oliver Beckstein, Thomas B. Woolf, Elizabeth J. Denning, 2009 .

Influence of lipids on protein-mediated transmembrane transport.

Elizabeth J. Denning, O. Beckstein, 2013, Chemistry and physics of lipids.

Protonation of trimethylamine N-oxide (TMAO) is required for stabilization of RNA tertiary structure.

Alexander D. MacKerell, Elizabeth J. Denning, D. Thirumalai, 2013, Biophysical chemistry.

Impact of geometry optimization on base-base stacking interaction energies in the canonical A- and B-forms of DNA.

Alexander D. MacKerell, Alexander D MacKerell, Elizabeth J. Denning, 2013, The journal of physical chemistry. A.

Intrinsic contribution of the 2'-hydroxyl to RNA conformational heterogeneity.

Alexander D. MacKerell, Alexander D MacKerell, Elizabeth J. Denning, 2012, Journal of the American Chemical Society.

From the gating charge response to pore domain movement: Initial motions of Kv1.2 dynamics under physiological voltage changes

Elizabeth J. Denning, P. Crozier, T. Woolf, 2009, Molecular membrane biology.

Double bilayers and transmembrane gradients: a molecular dynamics study of a highly charged peptide.

Elizabeth J. Denning, T. Woolf, 2008, Biophysical journal.

Computing ensembles of transitions from stable states: Dynamic importance sampling

Juan R Perilla, Thomas B Woolf, Oliver Beckstein, 2011, J. Comput. Chem..

Chapter 14 Computational Models for Electrified Interfaces

Elizabeth J. Denning, T. Woolf, 2008 .

Impact of arsenic/phosphorus substitution on the intrinsic conformational properties of the phosphodiester backbone of DNA investigated using ab initio quantum mechanical calculations.

Alexander D. MacKerell, Elizabeth J. Denning, Alexander D Mackerell, 2011, Journal of the American Chemical Society.

MDAnalysis: A toolkit for the analysis of molecular dynamics simulations

Elizabeth J. Denning, T. Woolf, Naveen Michaud-Agrawal, 2011, J. Comput. Chem..

Protonation of trimethylamine N-oxide (TMAO) is required for stabilization of RNA tertiary structure.

Alexander D. MacKerell, Elizabeth J. Denning, D. Thirumalai, 2013, Biophysical chemistry.

Impact of 2′‐hydroxyl sampling on the conformational properties of RNA: Update of the CHARMM all‐atom additive force field for RNA

Alexander D. MacKerell, Elizabeth J. Denning, L. Nilsson, 2011, J. Comput. Chem..