Michael B. Eisen

发表

Low-cost, low-input RNA-seq protocols perform nearly as well as high-input protocols

Peter A. Combs, Michael B. Eisen, M. Eisen, 2015, PeerJ.

Phylogenetic Motif Detection by Expectation-Maximization on Evolutionary Mixtures

Michael B. Eisen, Alan M. Moses, Derek Y. Chiang, 2003, Pacific Symposium on Biocomputing.

Phylogenetically and spatially conserved word pairs associated with gene expression changes in yeasts

Eric S. Lander, Manolis Kamvysselis, Michael B. Eisen, 2003, RECOMB.

Use of an Evolutionary Model to Provide Evidence for a Wide Heterogenity of Required Affinities Between Transcription Factors and Their Binding Sites in Yeast

Michael B. Eisen, Richard W. Lusk, M. Eisen, 2007, Pacific Symposium on Biocomputing.

PointCloudXplore: Visual Analysis of 3D Gene Expression Data Using Physical Views and Parallel Coordinates

Jitendra Malik, Hans Hagen, Bernd Hamann, 2006, EuroVis.

Public-access group supports PubMed Central

Michael B. Eisen, Patrick O. Brown, Harold E. Varmus, 2002, Nature.

Bethesda Statement on Open Access Publishing

Richard J. Roberts, Richard K. Johnson, Peter Suber, 2003 .

The Stanford Microarray Database

David Botstein, Paul T. Spellman, Shuai Weng, 2001, Nucleic Acids Res..

Gene Shaving: a new class of clustering methods for expression arrays

Trevor Hastie, Robert Tibshirani, David Botstein, 2000 .

PointCloudXplore: a visualization tool for 3D gene expressiondata

Jitendra Malik, Hans Hagen, Bernd Hamann, 2006 .

Design of a combinatorial DNA microarray for protein-DNA interaction studies

Michael B. Eisen, Julian Mintseris, M. Eisen, 2006, BMC Bioinformatics.

Clustering gene expression patterns of fly embryos

Eugene W. Myers, Hanchuan Peng, Fuhui Long, 2006, 3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro, 2006..

Visualizing associations between genome sequences and gene expression data using genome-mean expression profiles

Michael B. Eisen, Derek Y. Chiang, Patrick O. Brown, 2001, ISMB.

Identification of regulatory elements using a feature selection method

Michael B. Eisen, Mark J. van der Laan, Sündüz Keles, 2002, Bioinform..

Native climate uniformly influences temperature-dependent growth rate in Drosophila embryos

Michael B. Eisen, Steven Gregory Kuntz, M. Eisen, 2013 .

Large-Scale Turnover of Functional Transcription Factor Binding Sites in Drosophila

David A. Nix, Michael B. Eisen, Xiaoyong Li, 2006, PLoS Comput. Biol..

PLoS Computational Biology: A New Community Journal

Philip E. Bourne, Michael B. Eisen, Steven E. Brenner, 2005, PLoS Comput. Biol..

Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments

Michael B. Eisen, Alan M. Moses, Daniel A. Pollard, 2006, BMC Bioinformatics.

Ten Years of PLoS‡ Computational Biology: A Decade of Appreciation and Innovation

Philip E. Bourne, Michael B. Eisen, Steven E. Brenner, 2015, PLoS Comput. Biol..

Coupling visualization and data analysis for knowledge discovery from multi-dimensional scientific data

Hans Hagen, Bernd Hamann, Oliver Rübel, 2010, ICCS.

Benchmarking tools for the alignment of functional noncoding DNA

Jens Stoye, Michael B. Eisen, Casey M. Bergman, 2004, BMC Bioinformatics.

Faculty Opinions recommendation of Epitope discovery with phylogenetic hidden Markov models.

Michael B. Eisen, Devin Scannell, M. Eisen, 2010 .

Integrating Data Clustering and Visualization for the Analysis of 3D Gene Expression Data

Jitendra Malik, Hans Hagen, Bernd Hamann, 2010, IEEE ACM Trans. Comput. Biol. Bioinform..

Supervised Detection of Regulatory Motifs in

Michael B. Eisen, Sandrine Dudoit, Biao Xing, 2003 .

Reference-free Association Mapping from Sequencing Reads Using k-mers.

Lior Pachter, Michael B. Eisen, Ibrahim Asadullah Tahmid, 2018, Bio-protocol.

PointCloudXplore 2: Visual Exploration of 3D Gene Expression

Jitendra Malik, Hans Hagen, Bernd Hamann, 2007, Visualization of Large and Unstructured Data Sets.

GATA: a graphic alignment tool for comparative sequence analysis

David A. Nix, Michael B. Eisen, M. Eisen, 2005, BMC Bioinformatics.

Rapid quantitative profiling of complex microbial populations

Michael B. Eisen, Elisabeth M. Bik, Patrick O. Brown, 2006, Nucleic acids research.

Zelda Binding in the Early Drosophila melanogaster Embryo Marks Regions Subsequently Activated at the Maternal-to-Zygotic Transition

Michael B. Eisen, Tommy Kaplan, Melissa M. Harrison, 2011, PLoS genetics.

Improving transcriptome assembly through error correction of high-throughput sequence reads

Michael B. Eisen, Matthew D. MacManes, M. Eisen, 2013, PeerJ.

Association of cohesin and Nipped-B with transcriptionally active regions of the Drosophila melanogaster genome

Michael B. Eisen, Mark D. Biggin, Justin C. Fay, 2008, Chromosoma.

Dense Bicoid Hubs Accentuate Binding along the Morphogen Gradient

Michael B. Eisen, Mustafa Mir, Xavier Darzacq, 2017 .

Establishment of regions of genomic activity during the Drosophila maternal to zygotic transition

Michael B. Eisen, Tommy Kaplan, Melissa M. Harrison, 2014 .

Insights into social insects from the genome of the honeybee Apis mellifera

Ying Wang, Michal Linial, Andrew G. Clark, 2006, Nature.

Control of Embryonic Stem Cell Lineage Commitment by Core Promoter Factor, TAF3

Michael B. Eisen, Robert Tjian, M. Eisen, 2011, Cell.

Identification of clinically distinct types of diffuse large B-cell lymphoma based on gene expressio

Robert Tibshirani, David Botstein, Li Yang, 2000 .

Binding Site Turnover Produces Pervasive Quantitative Changes in Transcription Factor Binding between Closely Related Drosophila Species

Lior Pachter, Cole Trapnell, Michael B. Eisen, 2010, PLoS biology.

EXPLORATORY SCREENING OF GENES AND CLUSTERS FROM MICROARRAY EXPERIMENTS

Robert Tibshirani, David Botstein, Michael B. Eisen, 2002 .

Big Genomes Facilitate the Comparative Identification of Regulatory Elements

Michael B. Eisen, Brant K. Peterson, Daniel R. Papaj, 2009, PloS one.

Imputing Missing Data for Gene Expression Arrays

Trevor Hastie, Robert Tibshirani, David Botstein, 2001 .

The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus

Michael B. Eisen, Mark Johnston, Antonis Rokas, 2011, G3: Genes | Genomes | Genetics.

Kinetic sculpting of the seven stripes of the Drosophila even-skipped gene

Michael B. Eisen, Hernan G. Garcia, M. Eisen, 2018, bioRxiv.

Characterization of the transcriptome, nucleotide sequence polymorphism, and natural selection in the desert adapted mouse Peromyscus eremicus

Michael B. Eisen, Matthew D. MacManes, M. Eisen, 2014, bioRxiv.

Drosophila Embryogenesis Scales Uniformly across Temperature in Developmentally Diverse Species

Michael B. Eisen, M. Eisen, Steven G. Kuntz, 2013, bioRxiv.

Divergence of Transcription Factor Binding in Drosophila Embryos with Highly Conserved Gene Expression Permalink

Michael B. Eisen, Tommy Kaplan, M. Eisen, 2013 .

A Careful Look at Binding Site Reorganization in the even-skipped Enhancers of Drosophila and Sepsids

Michael B. Eisen, Brant K. Peterson, M. Eisen, 2008, PLoS genetics.