Antoine Danchin

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Information of the chassis and information of the program in synthetic cells

Antoine Danchin, A. Danchin, 2009, Systems and Synthetic Biology.

Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns"

Antoine Danchin, Etienne Larsabal, A. Danchin, 2005, BMC Bioinformatics.

The Delphic Boat: What Genomes Tell Us

Antoine Danchin, A. Danchin, 2002 .

The ten grand challenges of synthetic life

Natalio Krasnogor, Antoine Danchin, Steen Rasmussen, 2011, Systems and Synthetic Biology.

Cooperative Computer System For Genome Sequence Analysis

Gilles Bisson, Alain Viari, Antoine Danchin, 1995, ISMB.

Integrated Genome Informatics

Antoine Danchin, François Rechenmann, Claudine Médigue, 1998 .

Bio::NEXUS: a Perl API for the NEXUS format for comparative biological data

Antoine Danchin, Matteo Marsili, Massimo Vergassola, 2006, BMC Bioinformatics.

Title Page / Table of Contents / Editorial

Antoine Danchin, Alexander Scherl, Jean-Charles Sanchez, 2006, Complexus.

Omnipresent Maxwell's demons orchestrate information management in living cells

Antoine Danchin, Victor de Lorenzo, Grégory Boël, 2019, Microbial biotechnology.

To understand and solve, share, foresee

Antoine Danchin, 2013 .

ISMB 2003 Organization

Peter Adams, Antoine Danchin, Kevin Burrage, 2003, ISMB.

METALGEN.DB: metabolism linked to the genome of Escherichia coli, a graphics-oriented database

Antoine Danchin, Alain Hénaut, T. Rouxel, 1993, Comput. Appl. Biosci..

Re-annotation of genome microbial CoDing-Sequences: finding new genes and inaccurately annotated genes

Antoine Danchin, Claudine Médigue, Stéphanie Bocs, 2002, BMC Bioinformatics.

A brief history of genome research and bioinformatics in France

Antoine Danchin, A. Danchin, 2000, Bioinform..

Interpretable and accurate prediction models for metagenomics data

Yann Chevaleyre, Blaise Hanczar, Jean-Daniel Zucker, 2018, bioRxiv.

Relationship of SARS-CoV to other pathogenic RNA viruses explored by tetranucleotide usage profiling

Antoine Danchin, Yee Leng Yap, Xue Wu Zhang, 2003, BMC Bioinformatics.

Adenylcyclasederivater, process for their preparation and their use

Philippe Glaser, Antoine Danchin, Evelyn Krin, 1989 .

SubtiList: the reference database for the Bacillus subtilis genome

Antoine Danchin, Ivan Moszer, Cécilia Fabry, 2002, Nucleic Acids Res..

Hon-yaku: a biology-driven Bayesian methodology for identifying translation initiation sites in prokaryotes

Antoine Danchin, Yuko Makita, Michiel J. L. de Hoon, 2006, BMC Bioinformatics.

The SARS Case Study: An Alarm Clock?

Antoine Danchin, Gabriel Turinici, A. Danchin, 2006 .

Imagene: an integrated computer environment for sequence annotation and analysis

Alain Viari, Antoine Danchin, François Rechenmann, 1999, Bioinform..

The Cellular Chassis as the Basis for New Functionalities: Shortcomings and Requirements

Antoine Danchin, A. Danchin, 2015 .

From function to sequence, an integrated view of the genome texts

Antoine Danchin, A. Danchin, 1999 .

Genome structures, operating systems and the image of the machine

Antoine Danchin, Stanislas Noria, A. Danchin, 2004 .

Bacillus subtilis, the model Gram‐positive bacterium: 20 years of annotation refinement

Antoine Danchin, Colin R. Harwood, Claudine Médigue, 2017, Microbial biotechnology.

Le vivant et la machine de Turing : Grandes et petites énigmes mathématiques

Antoine Danchin, 2001 .

Data Analysis Using a Learning Program, a Case Study: An Application of PLAGE to a Biological Sequence Analysis

Olivier Gascuel, Antoine Danchin, 1988, ECAI.

Three overlooked key functional classes for building up minimal synthetic cells

Antoine Danchin, A. Danchin, 2021, Synthetic biology.

The secE Gene of Helicobacter pylori

Antoine Danchin, Benjamin Chun-Yu Wong, Claudine Médigue, 2002, Journal of bacteriology.

Visualizing the proteome of Escherichia coli: an efficient and versatile method for labeling chromosomal coding DNA sequences (CDSs) with fluorescent protein genes

Jing Wang, Antoine Danchin, Jian-Dong Huang, 2007, Nucleic acids research.

Extracting biological information from DNA arrays: an unexpected link between arginine and methionine metabolism in Bacillus subtilis

Jean-Jacques Daudin, Stéphane Robin, Antoine Danchin, 2001, Genome Biology.

Persistence drives gene clustering in bacterial genomes

Antoine Danchin, A. Danchin, E. Rocha, 2008, BMC Genomics.

The logic of metabolism

Antoine Danchin, Agnieszka Sekowska, A. Danchin, 2015 .

Synthetic biology: discovering new worlds and new words

Antoine Danchin, Víctor de Lorenzo, A. Danchin, 2008, EMBO reports.

Natural selection and immortality

Antoine Danchin, A. Danchin, 2008, Biogerontology.

CymR, the master regulator of cysteine metabolism in Staphylococcus aureus, controls host sulphur source utilization and plays a role in biofilm formation

Olivier Poupel, Antoine Danchin, Isabelle Martin-Verstraete, 2009, Molecular microbiology.

Antifragility and Tinkering in Biology (and in Business) Flexibility Provides an Efficient Epigenetic Way to Manage Risk

Antoine Danchin, Stanislas Noria, A. Danchin, 2011, Genes.

An updated metabolic view of the Bacillus subtilis 168 genome.

Anne Morgat, Antoine Danchin, Eugeni Belda, 2013, Microbiology.

No wisdom in the crowd: genome annotation in the era of big data – current status and future prospects

Antoine Danchin, Christos Ouzounis, C. Ouzounis, 2018, Microbial biotechnology.

2-ketobutyrate: A putative alarmone of Escherichia coli

Antoine Danchin, Liliane Dondon, Jacques Daniel, 2004, Molecular and General Genetics MGG.

Hierarchies and networks

Antoine Danchin, antoine.danchin org, 安東唐善•, 2009 .

Decrypting the H-NS-dependent regulatory cascade of acid stress resistance in Escherichia coli

Antoine Danchin, A. Danchin, E. Krin, 2010, BMC Microbiology.

Transcription Regulation Coupling of the Divergent argG and metY Promoters in Escherichia coli K-12

Antoine Danchin, A. Danchin, E. Krin, 2003, Journal of bacteriology.

The extant core bacterial proteome is an archive of the origin of life

Antoine Danchin, Stanislas Noria, A. Danchin, 2007, Proteomics.

Unknown unknowns: essential genes in quest for function

Antoine Danchin, A. Danchin, Gang Fang, 2016, Microbial biotechnology.

Base composition bias might result from competition for metabolic resources.

Eduardo P C Rocha, Antoine Danchin, A. Danchin, 2002, Trends in genetics : TIG.

Large‐scale monitoring of pleiotropic regulation of gene expression by the prokaryotic nucleoid‐associated protein, H‐NS

Antoine Danchin, A. Danchin, F. Hommais, 2001, Molecular microbiology.

Hydrothermally generated aromatic compounds are consumed by bacteria colonizing in Atlantis II Deep of the Red Sea

Antoine Danchin, Yong Wang, Pei-Yuan Qian, 2011, The ISME Journal.

An analysis of determinants of amino acids substitution rates in bacterial proteins.

Eduardo P C Rocha, Antoine Danchin, A. Danchin, 2004, Molecular biology and evolution.

How essential are nonessential genes?

Antoine Danchin, Eduardo Rocha, A. Danchin, 2005, Molecular biology and evolution.

Structure-based discovery of inhibitors of the YycG histidine kinase: new chemical leads to combat Staphylococcus epidermidis infections.

Zhiqiang Qin, Antoine Danchin, Yang Wu, 2006, BMC microbiology.

Classification between normal and tumor tissues based on the pair-wise gene expression ratio

Antoine Danchin, A. Danchin, Y. Yap, 2004, BMC Cancer.

Chemical reactivity drives spatiotemporal organisation of bacterial metabolism.

Antoine Danchin, Víctor de Lorenzo, Agnieszka Sekowska, 2014, FEMS microbiology reviews.

Universal biases in protein composition of model prokaryotes

Antoine Danchin, Claudine Médigue, Géraldine Pascal, 2005, Proteins.

Scaling up synthetic biology: Do not forget the chassis

Antoine Danchin, A. Danchin, 2012, FEBS letters.

Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains

Rick Stevens, Folker Meyer, Victor Markowitz, 2014, PLoS biology.

Three Different Systems Participate in l-Cystine Uptake in Bacillus subtilis

Antoine Danchin, Isabelle Martin-Verstraete, A. Danchin, 2004, Journal of bacteriology.

Gene essentiality determines chromosome organisation in bacteria.

Eduardo P C Rocha, Antoine Danchin, A. Danchin, 2003, Nucleic acids research.

Conserved transcription factor binding sites of cancer markers derived from primary lung adenocarcinoma microarrays

Robin Gras, Antoine Danchin, Yee Leng Yap, 2005, Nucleic acids research.

A phylogenetic view of bacterial ribonucleases.

Antoine Danchin, A. Danchin, 2009, Progress in molecular biology and translational science.

Essentiality, not expressiveness, drives gene-strand bias in bacteria

Eduardo P C Rocha, Antoine Danchin, A. Danchin, 2003, Nature Genetics.

Cells need safety valves

Antoine Danchin, A. Danchin, 2009, BioEssays : news and reviews in molecular, cellular and developmental biology.

A strand‐specific model for chromosome segregation in bacteria

Antoine Danchin, Vic Norris, A. Danchin, 2003, Molecular microbiology.

Reminder to deposit DNA sequences

Antoine Danchin, Sumio Sugano, Kaoru Fukami-Kobayashi, 2016, Science.

A double epidemic model for the SARS propagation

Antoine Danchin, Gabriel Turinici, Tuen Wai Ng, 2003, BMC infectious diseases.

Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC

Antoine Danchin, Stefan Engelen, Claudine Médigue, 2011, BMC Genomics.

3-phenylpropionate catabolism and the Escherichia coli oxidative stress response.

Antoine Danchin, A. Danchin, J. L. Le Caer, 2005, Research in microbiology.

Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human.

Guo-Ping Zhao, Zong-Ming Guo, Antoine Danchin, 2005, Proceedings of the National Academy of Sciences of the United States of America.

From dirt to industrial applications: Pseudomonas putida as a Synthetic Biology chassis for hosting harsh biochemical reactions.

Antoine Danchin, Víctor de Lorenzo, Max Chavarría, 2016, Current opinion in chemical biology.

From essential to persistent genes: a functional approach to constructing synthetic life

Carlos G. Acevedo-Rocha, Antoine Danchin, Markus Schmidt, 2013, Trends in genetics : TIG.

Confidence, tolerance, and allowance in biological engineering: The nuts and bolts of living things

Antoine Danchin, Manuel Porcar, Víctor de Lorenzo, 2015, BioEssays : news and reviews in molecular, cellular and developmental biology.