Stefan Schuster

发表

Xabier Larrucea, Gorka Benguria, Stefan Schuster, 2007, 2007 Sixth International IEEE Conference on Commercial-off-the-Shelf (COTS)-Based Software Systems (ICCBSS'07).

Simulation and analysis of metabolic networks by time-dependent Petri nets

Monika Heiner, Ina Koch, Stefan Schuster, 1999, German Conference on Bioinformatics.

Systems biology Metatool 5.0: fast and ﬂexible elementary modes analysis

Stefan Schuster, Axel von Kamp, S. Schuster, 2006 .

Capturing Biological Frequency Control of Circadian Clocks by Reaction System Modularization

Thomas Hinze, Stefan Schuster, Christian Bodenstein, 2011, ERCIM News.

Accessibility considerations in designing a layperson's application for score music description

Jakob Doppler, Stefan Schuster, Julian Rubisch, 2012, AM '12.

Alternative splicing of mutually exclusive exons - A review

Stefan Schuster, Martin Pohl, Ralf H. Bortfeldt, 2013, Biosyst..

Accuracy limits of a seam-tracking algorithm for microwave systems at mm-wave frequencies

Andreas Stelzer, Stefan Schuster, Andreas Haderer, 2013, 21st European Signal Processing Conference (EUSIPCO 2013).

SDSOA 2007: International Workshop on Systems Development in SOA Environments

Marin Litoiu, Grace A. Lewis, Kostas Kontogiannis, 2007, 29th International Conference on Software Engineering (ICSE'07 Companion).

Modeling the Seasonal Adaptation of Circadian Clocks by Changes in the Network Structure of the Suprachiasmatic Nucleus

Matjaz Perc, Stefan Schuster, Christian Bodenstein, 2012, PLoS Comput. Biol..

The Influence of Windowing on Bias and Variance of DFT-Based Frequency and Phase Estimation

Andreas Stelzer, Stefan Schuster, Stefan Scheiblhofer, 2009, IEEE Transactions on Instrumentation and Measurement.

Pre-start timing information is used to set final linear speed in a C-start manoeuvre

Stefan Schuster, Caroline Reinel, Caroline P Reinel, 2014, Journal of Experimental Biology.

Demand Response by Decentralized Device Control Based on Voltage Level

Wilfried Elmenreich, Stefan Schuster, 2013, IWSOS.

Can single knockouts accurately single out gene functions?

Isaac Meilijson, Eytan Ruppin, Stefan Schuster, 2008, BMC Systems Biology.

On Computing Solutions of Linear Diophantine Equations with One Non-linear Parameter

Stefan Schuster, Armin Größlinger, Armin Größlinger, 2008, 2008 10th International Symposium on Symbolic and Numeric Algorithms for Scientific Computing.

Response to comment on 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'

Christoph Kaleta, David A. Fell, Stefan Schuster, 2009, Bioinform..

Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis

Christoph Kaleta, Reinhard Guthke, Stefan Schuster, 2010, BMC Systems Biology.

Chemical Analog Computers for Clock Frequency Control Based on P Modules

Thomas Hinze, Stefan Schuster, Christian Bodenstein, 2011, Int. Conf. on Membrane Computing.

Analyzing Large enzymatic reaction networks

Thomas Pfeiffer, Stefan Schuster, Juan Carlos Nuño, 1999, German Conference on Bioinformatics.

A structural approach to the analysis of metabolic networks illustrated with erythrocyte metabolism

Thomas Pfeiffer, Stefan Schuster, Juan Carlos Nuño, 1998, German Conference on Bioinformatics.

Pervasive Selection for Cooperative Cross-Feeding in Bacterial Communities

Christoph Kaleta, Stefan Schuster, Anja Schröter, 2016, PLoS Comput. Biol..

Detecting structural invariants in biological reaction networks.

Stefan Schuster, Christoph Kaleta, Jörn Behre, 2012, Methods in molecular biology.

Pathway alignment: Application in the comparative analysis of glycolysis

Peer Bork, Stefan Schuster, Martijn A. Huynen, 1998, German Conference on Bioinformatics.

Assessing the readiness for enterprise collaboration and enterprise interoperability

Stefan Schuster, Juncal Alonso, Igor Santos, 2008, 2008 IEEE International Technology Management Conference (ICE).

Structural Analysis of Metabolic Networks: Elementary Flux Modes, Analogy to Petri Nets, and Application to Mycoplasma Pneumoniae

Thomas Pfeiffer, Ina Koch, Stefan Schuster, 2000, German Conference on Bioinformatics.

Envision: A Measure of Infrastructure Sustainability

Stefan Schuster, Shilpa Shivakumar, Tom Pedersen, 2014 .

Estimating Photo-Voltaic Power Supply without Smart Metering Infrastructure

Hermann de Meer, Stefan Schuster, Martin Kreuzer, 2013, E2DC.

Batman - The Dark Knight: A Game Theoretical Approach

Stefan Schuster, Sabine Hummert, Christian Hummert, 2010, FCS.

A minimal model for explaining the higher ATP production in the Warburg effect

Daniel Boley, Christoph Kaleta, Stefan Schuster, 2015, PeerJ Prepr..

Frontmatter, Table of Contents, Preface, Programm Committee, Supportes and Sponsors, Index of Authors

Stefan Schuster, Sebastian Böcker, Franziska Hufsky, 2012, GCB.

Computing the shortest elementary flux modes in genome-scale metabolic networks

Angel Rubio, Francisco J. Planes, Christoph Kaleta, 2009, Bioinform..

Statistics Instead of Stopover - Range Predictions for Electric Vehicles

Stefan Schuster, Christian Kluge, Diana Sellner, 2016, OR.

YANA – a software tool for analyzing flux modes, gene-expression and enzyme activities

Stefan Schuster, Axel von Kamp, Thomas Dandekar, 2005, BMC Bioinformatics.

Model-Based Identification Method for Pulse Position Coded Surface Acoustic Wave Identification Tags

Andreas Stelzer, Stefan Schuster, Stefan Scheiblhofer, 2014, IEEE Transactions on Instrumentation and Measurement.

Treatment of multifunctional enzymesin metabolic pathway analysis

Stefan Schuster, Ionela Zevedei-Oancea, S. Schuster, 2002, German Conference on Bioinformatics.

Making predictions about robustness and flexibility from metabolic network structure

Steffen Klamt, Stefan Schuster, Jörg Stelling, 2003, German Conference on Bioinformatics.

Knowledge Representation and Graph Transformation

Stefan Schuster, 1998, TAGT.

Structure and Hierarchy of Influenza Virus Models Revealed by Reaction Network Analysis

Peter Dittrich, Stefan Schuster, Manja Marz, 2019, Viruses.

Metabolic Pathway Analysis : from small to genome-scale networks

Christoph Kaleta, David A. Fell, Stefan Schuster, 2011 .

Selection of human tissue-specific elementary flux modes using gene expression data

Angel Rubio, Francisco J. Planes, Stefan Schuster, 2013, Bioinform..

Assessing the Readiness to Move into the Cloud

Stefan Schuster, Leire Orue-Echevarria Arrieta, Juncal Alonso, 2012, CloudComp.

Special issue: Integration of OMICs datasets into Metabolic Pathway Analysis

Steffen Klamt, Christoph Kaleta, Stefan Schuster, 2011, Biosyst..

In Silico Evidence for Gluconeogenesis from Fatty Acids in Humans

Christoph Kaleta, Reinhard Guthke, Stefan Schuster, 2011, PLoS Comput. Biol..

Modelling Signalling Networks with Incomplete Information about Protein Activation States: A P System Framework of the KaiABC Oscillator

Thomas Hinze, Thorsten Lenser, Stefan Schuster, 2009, Workshop on Membrane Computing.

Optimized Parameter Estimation for the LPM Local Positioning System

Andreas Stelzer, Stefan Schuster, Reimar Pfeil, 2013, IEEE Transactions on Instrumentation and Measurement.

Modeling of the U1 snRNP assembly pathway in alternative splicing in human cells using Petri nets

Ina Koch, Stefan Schuster, Ralf H. Bortfeldt, 2009, Comput. Biol. Chem..

Ramp sequence analysis to resolve multi target scenarios for a 77-GHz FMCW radar sensor

Linus Maurer, Reinhard Feger, Andreas Stelzer, 2008, 2008 11th International Conference on Information Fusion.

Can sugars be produced from fatty acids? A test case for pathway analysis tools

Christoph Kaleta, David A. Fell, Stefan Schuster, 2009, Bioinform..

Exploring metabolic pathways in genome-scale networks via generating flux modes

Francisco J. Planes, Alexander Bockmayr, Stefan Schuster, 2011, Bioinform..

TassDB: a database of alternative tandem splice sites

Rolf Backofen, Michael Hiller, Stefan Schuster, 2006, Nucleic Acids Res..

Determination of scoring functions for protein damage susceptibility

Stefan Schuster, Maximilian Fichtner, Heiko Stark, 2020, Biosyst..

A theoretical framework for detecting signal transfer routes in signalling networks

Stefan Schuster, Ionela Zevedei-Oancea, S. Schuster, 2005, Comput. Chem. Eng..

Hands-on metabolism analysis of complex biochemical networks using elementary flux modes.

Christoph Kaleta, Stefan Schuster, Sascha Schäuble, 2011, Methods in enzymology.

Integrated network reconstruction, visualization and analysis using YANAsquare

Michael Hecker, Christoph Kaleta, Stefan Schuster, 2007, BMC Bioinformatics.

Tutorial 4: Adopting SOA

Stefan Schuster, Igor Santos, Leire Bastida Merino, 2008, Seventh International Conference on Composition-Based Software Systems (ICCBSS 2008).

Effects of motion models and sensor data on the accuracy of the LPM positioning system

Andreas Stelzer, Stefan Schuster, Klaus Pourvoyeur, 2006, 2006 9th International Conference on Information Fusion.

Robust Acoustic Positioning for Safety Applications in Underground Mining

Stefan Schuster, Markus Pichler, Florian Hammer, 2015, IEEE Transactions on Instrumentation and Measurement.

Exchange of Business Process Models Using the POP* Meta-model

Stefan Schuster, Ricardo Chalmeta, Reyes Grangel, 2005, Business Process Management Workshops.

Equality of average and steady-state levels in some nonlinear models of biological oscillations

Matjaz Perc, Stefan Schuster, Marko Marhl, 2008, Theory in Biosciences.

Pathway Analysis of Metabolic Networks: New version of METATOOL and convenient classification of metabolites

Stefan Schuster, Ferdinand Moldenhauer, Ionela Zevedei-Oancea, 2001, German Conference on Bioinformatics.

Combining Metabolic Pathway Analysis with Evolutionary Game Theory. Explaining the occurrence of low-yield pathways by an analytic optimization approach

Christoph Kaleta, Stefan Schuster, Anja Schröter, 2011, Biosyst..

Bias and Variance in Frequency Estimation at the Leading Edge of a Peak in the Spectrum of a Windowed Signal Under Multipath Mitigation

Andreas Stelzer, Stefan Schuster, Thomas Wagner, 2013, IEEE Transactions on Instrumentation and Measurement.

TassDB2 - A comprehensive database of subtle alternative splicing events

Rolf Backofen, Michael Hiller, Thorsten Lenser, 2010, BMC Bioinformatics.

Semantic Movie Scene Annotation for Rapid Prototyping of Score Music

Jakob Doppler, Stefan Schuster, Julian Rubisch, 2012, ICMC.

Biochemical Frequency Control by Synchronisation of Coupled Repressilators: An In Silico Study of Modules for Circadian Clock Systems

Thomas Hinze, Stefan Schuster, Christian Bodenstein, 2011, Comput. Intell. Neurosci..

Jensen’s inequality as a tool for explaining the effect of oscillations on the average cytosolic calcium concentration

Matjaz Perc, Stefan Schuster, Christian Bodenstein, 2010, Theory in Biosciences.

Sparse algorithms and bounds for statistically and computationally efficient robust estimation

Stefan Schuster, 2011, 2011 19th European Signal Processing Conference.

From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints

Steffen Klamt, Christian Jungreuthmayer, Stefan Schuster, 2017, PLoS Comput. Biol..

Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae

Thomas Pfeiffer, Ina Koch, Stefan Schuster, 2002, Bioinform..

Synchronisation of Biological Clock Signals - Capturing Coupled Repressilators from a Control Systems Perspective

Thomas Hinze, Stefan Schuster, Mathias Schumann, 2011, BIOSIGNALS.

ModuleDiscoverer: Identification of regulatory modules in protein-protein interaction networks

Reinhard Guthke, Stefan Schuster, Mika Gustafsson, 2017, Scientific Reports.

Modeling Signal Transduction in Enzyme Cascades with the Concept of Elementary Flux Modes

Stefan Schuster, Jörn Behre, S. Schuster, 2009, J. Comput. Biol..

Archerfish fast-start decisions can take an additional variable into account

Stefan Schuster, Caroline P Reinel, 2016, Journal of Experimental Biology.

Topological analysis of metabolic and regulatory networks by decomposition methods

Stefan Schuster, Reinhart Heinrich, S. Schuster, 2003 .

Refined algorithm and computer program for calculating all non-negative fluxes admissible in steady states of biochemical reaction systems with or without some flux rates fixed

Stefan Schuster, R. Schuster, S. Schuster, 1993, Comput. Appl. Biosci..

CASOP GS: Computing Intervention Strategies Targeted at Production Improvement in Genome-scale Metabolic Networks

Steffen Klamt, Christoph Kaleta, Stefan Schuster, 2010, GCB.

Phase estimation mean square error and threshold effects for windowed and amplitude modulated sinusoidal signals

Reinhard Feger, Andreas Stelzer, Stefan Schuster, 2006, 2006 14th European Signal Processing Conference.

Accurate parameter estimation for amplitude modulated sinusoidal signals incorporating smoothness constraints

Reinhard Feger, Andreas Stelzer, Stefan Schuster, 2008, 2008 16th European Signal Processing Conference.

Hardware and Signal Processing for a Novel Multi-Lap-Joint Measurement System for Automated Welding Applications

Andreas Stelzer, Stefan Schuster, Werner Scheiblhofer, 2014, IEEE Transactions on Instrumentation and Measurement.

Time, Language and Action - A Unified Long-Term Memory Model for Sensory-Motor Chains and Word Schemata.

Thomas Hinze, Stefan Schuster, Christian Bodenstein, 2011 .

Predicting novel pathways in genome-scale metabolic networks.

Stefan Schuster, Christoph Kaleta, Luís F de Figueiredo, 2010, Biochemical Society transactions.

Radio-Acoustic-Sounding System – berührungslose und abstandsaufgelöste akustische Temperaturmessung im industriellen Umfeld

Stefan Schuster, Stefan Scheiblhofer, Bernhard Zagar, 2018, Elektrotech. Informationstechnik.

Computing Elementary Flux Modes in Genome-scale Metabolic Networks

Christoph Kaleta, Stefan Schuster, Luis F. de Figueiredo, 2009, GCB.

A Genome-Scale Database and Reconstruction of Caenorhabditis elegans Metabolism.

Stefan Schuster, Silvio Waschina, Christoph Kaleta, 2016, Cell systems.

A theory of optimal differential gene expression.

Edda Klipp, Stefan Schuster, Wolfram Liebermeister, 2004, Bio Systems.

Recent Developments in Metabolic Pathway Analysis and Their Potential Implications for Biotechnology and Medicine

David A. Fell, Stefan Schuster, Matthias Reuss, 2000 .

BIFURCATION ANALYSIS OF CALCIUM OSCILLATIONS: TIME-SCALE SEPARATION, CANARDS, AND FREQUENCY LOWERING

Stefan Schuster, Marko Marhl, S. Schuster, 2001 .

GC content dependency of open reading frame prediction via stop codon frequencies.

Stefan Schuster, S. Schuster, G. Theißen, 2012, Gene.

ELEMENTARY MODES OF FUNCTIONING IN BIOCHEMICAL NETWORKS

Stefan Schuster, Claus C. Hilgetag, John H. Woods, 1996 .

Evolutionary game theory: molecules as players.

Andreas Deutsch, David Basanta, Stefan Schuster, 2014, Molecular bioSystems.

Comparative Study on Alternative Splicing in Human Fungal Pathogens Suggests Its Involvement During Host Invasion

Kerstin Voigt, Stefan Schuster, Jörg Linde, 2018, Front. Microbiol..

Simplification of complex kinetic models used for the quantitative analysis of nuclear magnetic resonance or radioactive tracer studies

Stefan Schuster, Hermann-Georg Holzhütter, Ronny Schuster, 1992 .

Detecting and investigating substrate cycles in a genome‐scale human metabolic network

Stefan Schuster, Christoph Kaleta, S. Schuster, 2012, The FEBS journal.

A minimal model for decoding of time-limited Ca2+ oscillations.

Matjaz Perc, Stefan Schuster, Marko Marhl, 2006, Biophysical chemistry.

Modeling the rock - scissors - paper game between bacteriocin producing bacteria by Lotka-Volterra equations

Stefan Schuster, Gunter Neumann, 2007 .

Mathematical models for explaining the Warburg effect: a review focussed on ATP and biomass production.

Daniel Boley, Stefan Schuster, Christoph Kaleta, 2015, Biochemical Society transactions.

Theoretical study of lipid biosynthesis in wild‐type Escherichia coli and in a protoplast‐type L‐form using elementary flux mode analysis

Stefan Schuster, Christoph Kaleta, Andreas Petzold, 2010, The FEBS journal.

Applying metabolic pathway analysis to make good use of methanol

Steffen Klamt, Stefan Schuster, 2002 .

5th International Conference on Systems Biology (ICSB 2004), Heidelberg, October 9-13, 2004.

Roland Eils, Stefan Schuster, Stefan Schuster, 2006, Bio Systems.

Pathway analysis of NAD+ metabolism.

Stefan Schuster, Mathias Ziegler, Luis F de Figueiredo, 2011, The Biochemical journal.

Comparative analysis of sequence features involved in the recognition of tandem splice sites

Stefan Schuster, Dirk Holste, Karol Szafranski, 2008, BMC Genomics.

Selective regulation of cellular processes via protein cascades acting as band‐pass filters for time‐limited oscillations

Matjaz Perc, Stefan Schuster, Marko Marhl, 2005, FEBS letters.

Description of the algorithm for computing elementary flux modes

Stefan Schuster, David Fell, Thomas Dandekar, 2000 .

Commemorating the 1913 Michaelis–Menten paper Die Kinetik der Invertinwirkung: three perspectives

Stefan Schuster, Athel Cornish-Bowden, Jean-Pierre Mazat, 2014, The FEBS journal.

Optimal regulatory strategies for metabolic pathways in E. coli depending on protein costs

Reinhard Guthke, Stefan Schuster, Christoph Kaleta, 2011 .

A method for classifying metabolites in topological pathway analyses based on minimization of pathway number.

Stefan Schuster, Thomas Dandekar, Ferdinand Moldenhauer, 2003, Bio Systems.

Dynamic optimization identifies optimal programmes for pathway regulation in prokaryotes

Stefan Schuster, Christoph Kaleta, Martin Bartl, 2013, Nature Communications.

Modelling oscillations of calcium and endoplasmic reticulum transmembrane potential: Role of the signalling and buffering proteins and of the size of the Ca2+ sequestering ER subcompartments

Stefan Schuster, Marko Marhl, Reinhart Heinrich, 1998 .

Biotechnology in silico: metabolic proteomics of Haemophilus influenzae

Stefan Schuster, 2000 .

Modeling temperature entrainment of circadian clocks using the Arrhenius equation and a reconstructed model from Chlamydomonas reinhardtii

Thomas Hinze, Stefan Schuster, Oliver Ebenhoeh, 2012, Journal of biological physics.

Calculating as Many Fluxes as Possible in Underdetermined Metabolic Networks

Steffen Klamt, Stefan Schuster, S. Schuster, 2004, Molecular Biology Reports.

Adenine and adenosine salvage pathways in erythrocytes and the role of S‐adenosylhomocysteine hydrolase

Stefan Schuster, S. Schuster, Dimitar Kenanov, 2005, The FEBS Journal.

Under what conditions signal transduction pathways are highly flexible in response to external forcing? A case study on calcium oscillations.

Stefan Schuster, Marko Marhl, S. Schuster, 2003, Journal of theoretical biology.

Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria

Stefan Schuster, Christoph Kaleta, Katrin Bohl, 2013, The ISME Journal.

Quantitative Model of Cell Cycle Arrest and Cellular Senescence in Primary Human Fibroblasts

Stefan Schuster, Ines Heiland, Sascha Schäuble, 2012, PloS one.

Optimal regulatory strategies for metabolic pathways in Escherichia coli depending on protein costs

Reinhard Guthke, Stefan Schuster, Christoph Kaleta, 2011, Molecular Systems Biology.

Influence of Platelet-rich Plasma on the immune response of human monocyte-derived dendritic cells and macrophages stimulated with Aspergillus fumigatus.

Stefan Schuster, Thomas Dandekar, Tobias Müller, 2017, International journal of medical microbiology : IJMM.

Agent-Based Modeling Approach of Immune Defense Against Spores of Opportunistic Human Pathogenic Fungi

Stefan Schuster, Marc Thilo Figge, Sebastian Germerodt, 2012, Front. Microbio..

Differential regulation of proteins by bursting calcium oscillations--a theoretical study.

Stefan Schuster, Marko Marhl, Beate Knoke, 2005, Bio Systems.

Use of pathway analysis and genome context methods for functional genomics of Mycoplasma pneumoniae nucleotide metabolism.

Peer Bork, Stefan Schuster, Mikhail Pachkov, 2007, Gene.

Calculability analysis in underdetermined metabolic networks illustrated by a model of the central metabolism in purple nonsulfur bacteria.

Steffen Klamt, Stefan Schuster, Ernst Dieter Gilles, 2002, Biotechnology and bioengineering.

Topological analysis of metabolic networks based on petri net theory.

Stefan Schuster, Ionela Zevedei-Oancea, 2011, Studies in health technology and informatics.