Raphael Gottardo

Quality Control and Robust Estimation for cDNA Microarrays With Replicates

Raphael Gottardo, Adrian E. Raftery, Ka Yee Yeung, 2006, Journal of the American Statistical Association.

Faculty Opinions recommendation of schex avoids overplotting for large single cell RNA-sequencing datasets.

Raphael Gottardo, 2019 .

DataPackageR: Reproducible data preprocessing, standardization and sharing using R/Bioconductor for collaborative data analysis

Greg Finak, Raphael Gottardo, Paul Obrecht, 2018, bioRxiv.

cytometree: a binary tree algorithm for automatic gating in cytometry analysis

Raphael Gottardo, Boris P. Hejblum, Daniel Commenges, 2018, bioRxiv.

GRAPHICAL MODELS FOR ZERO-INFLATED SINGLE CELL GENE EXPRESSION.

Andrew McDavid, Raphael Gottardo, Noah Simon, 2016, The annals of applied statistics.

Single Cell Assay

Andrew McDavid, Raphael Gottardo, Greg Finak, 2014 .

Orchestrating single-cell analysis with Bioconductor

Raphael Gottardo, Charlotte Soneson, Stephanie C. Hicks, 2019, Nature Methods.

A Pipeline for automated analysis of flow cytometry data: Preliminary results on lymphoma sub-type diagnosis

Raphael Gottardo, Ali Bashashati, Randy D. Gascoyne, 2009, 2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

Faculty of 1000 evaluation for A general and flexible method for signal extraction from single-cell RNA-seq data.

Raphael Gottardo, 2018 .

Faculty Opinions recommendation of Current best practices in single-cell RNA-seq analysis: a tutorial.

Raphael Gottardo, 2019 .

PICS: Probabilistic Inference for ChIP‐seq

Raphael Gottardo, Xuekui Zhang, Arnaud Droit, 2009, Biometrics.

F1000Prime recommendation of A systematic performance evaluation of clustering methods for single-cell RNA-seq data.

Raphael Gottardo, 2019 .