Matteo Brilli

发表

Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network

Pietro Liò, Matteo Brilli, Alessio Mengoni, 2008, BMC Bioinformatics.

Current trends in the bioinformatic sequence analysis of metabolic pathways in prokaryotes

Pietro Liò, Matteo Brilli, Renato Fani, 2007, Briefings Bioinform..

Topological Metrics in Blast Data Mining: Plasmid and Nitrogen-Fixing Proteins Case Studies

Pietro Liò, Matteo Brilli, Renato Fani, 2008, BIRD.

The CAI Analyser Package: Inferring Gene Expressivity from Raw Genomic Data

Matteo Brilli, Renato Fani, Donatella Degl'Innocenti, 2007, Silico Biol..

MotifScorer: using a compendium of microarrays to identify regulatory motifs

Pietro Liò, Matteo Brilli, Renato Fani, 2007, Bioinform..

Evolution of Intra-specific Regulatory Networks in a Multipartite Bacterial Genome

Matteo Brilli, Alessio Mengoni, Marco Bazzicalupo, 2015, PLoS Comput. Biol..

COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses

Chiara Romualdi, Luca Bianco, Julio Collado-Vides, 2015, Nucleic Acids Res..

The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis

Matteo Brilli, Alessio Mengoni, Marco Fondi, 2010, BMC Systems Biology.

Identification of metabolic network models from incomplete high-throughput datasets

Eugenio Cinquemani, Matteo Brilli, Hidde de Jong, 2011, Bioinform..

On the origin and evolution of biosynthetic pathways: integrating microarray data with structure and organization of the Common Pathway genes

Matteo Brilli, Marco Fondi, Renato Fani, 2007, BMC Bioinformatics.

The role of gene fusions in the evolution of metabolic pathways: the histidine biosynthesis case

Matteo Brilli, Marco Fondi, Renato Fani, 2007, BMC Evolutionary Biology.

Relations between Effects and Structure of Small Bicyclic Molecules on the Complex Model System Saccharomyces cerevisiae

Duccio Cavalieri, Matteo Brilli, Andrea Trabocchi, 2017, Front. Pharmacol..

A highly specific microRNA-mediated mechanism silences LTR retrotransposons of strawberry.

Matteo Brilli, A. Si-Ammour, N. Šurbanovski, 2016, The Plant journal : for cell and molecular biology.

Short and long-term genome stability analysis of prokaryotic genomes

Pietro Liò, Marie-France Sagot, Matteo Brilli, 2013, BMC Genomics.

A multi-omics study of the grapevine-downy mildew (Plasmopara viticola) pathosystem unveils a complex protein coding- and noncoding-based arms race during infection

Matteo Brilli, Michele Perazzolli, M. Perazzolli, 2018, Scientific Reports.

Exploring the evolutionary dynamics of plasmids: the Acinetobacter pan-plasmidome

Matteo Brilli, Alessio Mengoni, Marco Fondi, 2010, BMC Evolutionary Biology.

The Origin and Evolution of Operons: The Piecewise Building of the Proteobacterial Histidine Operon

Pietro Liò, Matteo Brilli, Renato Fani, 2005, Journal of Molecular Evolution.