Vahan Simonyan

发表

Identification and quantification of defective virus genomes in high throughput sequencing data using DVG-profiler, a novel post-sequence alignment processing algorithm

Luis V. Santana-Quintero, Konstantinos Karagiannis, Trent J Bosma, 2019, PloS one.

CDD: a curated Entrez database of conserved domain alignments

John B. Anderson, Benjamin A. Shoemaker, Anna R. Panchenko, 2003, Nucleic Acids Res..

Biocompute Objects—A Step towards Evaluation and Validation of Biomedical Scientific Computations

Raja Mazumder, Jeremy Goecks, Vahan Simonyan, 2016, PDA Journal of Pharmaceutical Science and Technology.

High-Performance Integrated Virtual Environment (HIVE) Tools and Applications for Big Data Analysis

Raja Mazumder, Vahan Simonyan, R. Mazumder, 2014, Genes.

CDD: a Conserved Domain Database for protein classification

John B. Anderson, Benjamin A. Shoemaker, Dachuan Zhang, 2004, Nucleic Acids Res..

Enabling Precision Medicine via standard communication of NGS provenance, analysis, and results

Gil Alterovitz, Carole Goble, Paul Walsh, 2017 .

Analysis of short-read data from NCBI SRA and CGHub/TCGA using HIVE-XLD: Evaluation of the effects of non-synonymous variation in the Human proteome

Raja Mazumder, Vahan Simonyan, 2016 .

Single-Nucleotide Variations in Cardiac Arrhythmias: Prospects for Genomics and Proteomics Based Biomarker Discovery and Diagnostics

Raja Mazumder, Tsung-Jung Wu, Vahan Simonyan, 2014, Genes.

Challenges, Solutions, and Quality Metrics of Personal Genome Assembly in Advancing Precision Medicine

Huixiao Hong, Leihong Wu, Baitang Ning, 2016, Pharmaceutics.

Advantages of distributed and parallel algorithms that leverage Cloud Computing platforms for large-scale genome assembly.

Konstantinos Krampis, Raja Mazumder, Priti Kumari, 2015 .

HIVE-Hexagon: High-Performance, Parallelized Sequence Alignment for Next-Generation Sequencing Data Analysis

Luis V. Santana-Quintero, Jean Thierry-Mieg, Raja Mazumder, 2014, PloS one.

Census-based rapid and accurate metagenome taxonomic profiling

Konstantinos Krampis, Raja Mazumder, Vahan Simonyan, 2014, BMC Genomics.

Baseline human gut microbiota profile in healthy people and standard reporting template

Konstantinos Krampis, Raja Mazumder, Keith A Crandall, 2018, bioRxiv.

Distinct Patterns of Expression of Transcription Factors in Response to Interferonβ and Interferonλ1.

Vahan Simonyan, Tammy Massie, Hilary Novatt, 2016, Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research.

Whole genome single-nucleotide variation profile-based phylogenetic tree building methods for analysis of viral, bacterial and human genomes.

Raja Mazumder, Keith A Crandall, Vahan Simonyan, 2014, Genomics.

Proteome‐wide analysis of nonsynonymous single‐nucleotide variations in active sites of human proteins

Raja Mazumder, Konstantinos Karagiannis, Vahan Simonyan, 2013, The FEBS journal.

Enabling precision medicine via standard communication of HTS provenance, analysis, and results

Gil Alterovitz, Carole Goble, Stian Soiland-Reyes, 2017, bioRxiv.