Elodie Ghedin

发表

Gemina: A Web-Based Epidemiology and Genomic Metadata System Designed to Identify Infectious Agents

Ravi Jain, Steven Salzberg, Lynn M. Schriml, 2007, BioSurveillance.

iGenomics: Comprehensive DNA sequence analysis on your Smartphone

Michael C Schatz, Elodie Ghedin, Aspyn Palatnick, 2020, GigaScience.

Measuring associations between the microbiota and repeated measures of continuous clinical variables using a lasso-penalized generalized linear mixed model

Frank Sciurba, Alison Morris, Karen T. Cuenco, 2018, BioData Min..

iGenomics: Comprehensive DNA sequence analysis on your Smartphone

Michael C. Schatz, Bin Zhou, Elodie Ghedin, 2020, bioRxiv.

Correction: Stochastic Processes Are Key Determinants of Short-Term Evolution in Influenza A Virus

Cecile Viboud, David J Lipman, Elodie Ghedin, 2006, PLoS Pathogens.

Network inference from multimodal data: A review of approaches from infectious disease transmission

Rumi Chunara, Bisakha Ray, Elodie Ghedin, 2016, Journal of Biomedical Informatics.

Inferring natural influenza transmission bottleneck sizes from sequencing data

Katia Koelle, Benjamin D. Greenbaum, Daniel B. Weissman, 2018 .

GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database

Lynn M. Schriml, Neil Hall, Owen White, 2009, Nucleic Acids Res..

Complete genomic sequences, a key residue in the spike protein and deletions in nonstructural protein 3b of US strains of the virulent and attenuated coronaviruses, transmissible gastroenteritis virus and porcine respiratory coronavirus

Daniel Janies, David Spiro, Elodie Ghedin, 2006, Virology.

Correlation of the lung microbiota with metabolic profiles in bronchoalveolar lavage fluid in HIV infection

Shuzhao Li, Karan Uppal, Dean P. Jones, 2016, Microbiome.

Comparison of the respiratory microbiome in healthy nonsmokers and smokers.

Patrick D Schloss, Kristina Crothers, Elodie Ghedin, 2013, American journal of respiratory and critical care medicine.

Stochastic Processes Are Key Determinants of Short-Term Evolution in Influenza A Virus

Cecile Viboud, Bryan T Grenfell, Mark A. Miller, 2006, PLoS pathogens.

Mixed Infection and the Genesis of Influenza Virus Diversity

Edward C. Holmes, Elodie Ghedin, Kirsten St. George, 2009, Journal of Virology.

The microbiome and the lung.

Erika von Mutius, Elodie Ghedin, H. Twigg, 2014, Annals of the American Thoracic Society.

Deep sequencing reveals mixed infection with 2009 pandemic influenza A (H1N1) virus strains and the emergence of oseltamivir resistance.

Timothy B. Stockwell, Elodie Ghedin, Xudong Lin, 2011, The Journal of infectious diseases.

The Evolutionary Genetics and Emergence of Avian Influenza Viruses in Wild Birds

Jonathan A. Runstadler, David E. Swayne, Edward C. Holmes, 2008, PLoS pathogens.

The sequence and analysis of Trypanosoma brucei chromosome II.

Steven Salzberg, Shiguo Zhou, Elodie Ghedin, 2003, Nucleic acids research.

Helminth Genomics: The Implications for Human Health

Makedonka Mitreva, Elodie Ghedin, Paul J. Brindley, 2009, PLoS neglected tropical diseases.

The human mycobiome in health and disease

Elodie Ghedin, E. Ghedin, A. Morris, 2013, Genome Medicine.

Quasispecies of bovine enteric and respiratory coronaviruses based on complete genome sequences and genetic changes after tissue culture adaptation

Daniel Janies, Anastasia Vlasova, David Spiro, 2007, Virology.

Phylogeography of the Spring and Fall Waves of the H1N1/09 Pandemic Influenza Virus in the United States

Jiang Fan, Cecile Viboud, Edward C. Holmes, 2010, Journal of Virology.

Molecular Epidemiology of A/H3N2 and A/H1N1 Influenza Virus during a Single Epidemic Season in the United States

Cecile Viboud, Mark A. Miller, Edward C. Holmes, 2008, PLoS pathogens.

Biologic, Antigenic, and Full-Length Genomic Characterization of a Bovine-Like Coronavirus Isolated from a Giraffe

Anastasia Vlasova, David Spiro, Elodie Ghedin, 2007, Journal of Virology.

Transmission Bottleneck Size Estimation from Pathogen Deep-Sequencing Data, with an Application to Human Influenza A Virus

Katia Koelle, Benjamin Greenbaum, Daniel B. Weissman, 2017, Journal of Virology.

Bovine-Like Coronaviruses Isolated from Four Species of Captive Wild Ruminants Are Homologous to Bovine Coronaviruses, Based on Complete Genomic Sequences

David Spiro, Elodie Ghedin, Linda J. Saif, 2006, Journal of Virology.

The genome of the blood fluke Schistosoma mansoni

John P. Overington, Adhemar Zerlotini, Anna V. Protasio, 2009, Nature.

Multiple Reassortment Events in the Evolutionary History of H1N1 Influenza A Virus Since 1918

Cécile Viboud, Edward C. Holmes, Elodie Ghedin, 2008, PLoS pathogens.

Comparative Genomics of Trypanosomatid Parasitic Protozoa

Daniel Nilsson, Jonathan Crabtree, Neil Hall, 2005, Science.

Members of a Large Retroposon Family Are Determinants of Post-Transcriptional Gene Expression in Leishmania

Elodie Ghedin, Frédéric Bringaud, Barbara Papadopoulou, 2007, PLoS pathogens.

Whole-Genome Analysis of Human Influenza A Virus Reveals Multiple Persistent Lineages and Reassortment among Recent H3N2 Viruses

Bryan T Grenfell, Yiming Bao, Steven L Salzberg, 2005, PLoS biology.

Fungi stabilize connectivity in the lung and skin microbial ecosystems

Richard Bonneau, Zachary D. Kurtz, Elodie Ghedin, 2018, Microbiome.

Translating microbiome futures

Richard Bonneau, Jun Wang, Curtis Huttenhower, 2018, Nature Biotechnology.

The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report

Emmanuel Dias-Neto, Joel Dudley, Mark Hernandez, 2016, Microbiome.

Temporally structured metapopulation dynamics and persistence of influenza A H3N2 virus in humans

Yi Guan, Timothy B. Stockwell, Edward C. Holmes, 2011, Proceedings of the National Academy of Sciences.

Erratum: Stochastic processes are key determinants of short-term evolution in influenza A virus (PLoS pathogens 2, 12 DOI: 10.1371/journal.ppat.0020125)

Cécile Viboud, David J. Lipman, Mark A. Miller, 2006 .

Longitudinal analysis of the lung microbiota of cynomolgous macaques during long-term SHIV infection

Mihai Pop, Elodie Ghedin, Laura Tipton, 2016, Microbiome.