Diogo N. Silva

发表

chewBBACA: A complete suite for gene-by-gene schema creation and strain identification

Mirko Rossi, Mickael Silva, Mario Ramirez, 2017, bioRxiv.

chewBBACA: A complete suite for gene-by-gene schema creation and strain identification

Mirko Rossi, Mickael Silva, Diogo N. Silva, 2017 .

Plasmid ATLAS: plasmid visual analytics and identification in high-throughput sequencing data

João A. Carriço, Valeria Bortolaia, Mário Ramirez, 2018, Nucleic Acids Res..

4Pipe4: No longer relies on buggy CAF output

Bruno Vieira, Diogo N. Silva, Francisco Pina-Martins, 2015 .

INNUENDO: A cross‐sectoral platform for the integration of genomics in the surveillance of food‐borne pathogens

Diogo N. Silva, João André Carriço, J. Lundén, 2018, EFSA Supporting Publications.

Analysis of the neutral and adaptive genetic variation of Colletotrichum kahawae and its relationship with the C. gloeosporioides complex

Diogo N. Silva, 2010 .

Genomic Patterns of Positive Selection at the Origin of Rust Fungi

Diogo N. Silva, O. Paulo, S. Duplessis, 2015, PloS one.

DEN-IM: dengue virus genotyping from amplicon and shotgun metagenomic sequencing

Diogo N. Silva, João André Carriço, J. Rossen, 2020, Microbial genomics.

New Mitochondrial and Nuclear Evidences Support Recent Demographic Expansion and an Atypical Phylogeographic Pattern in the Spittlebug Philaenus spumarius (Hemiptera, Aphrophoridae)

Diogo N. Silva, O. Paulo, P. Borges, 2014, PloS one.

Application of the Apn2/MAT locus to improve the systematics of the Colletotrichum gloeosporioides complex: an example from coffee (Coffea spp.) hosts

Diogo N. Silva, O. Paulo, L. Cai, 2012, Mycologia.

Legitimacy and Implications of Reducing Colletotrichum kahawae to Subspecies in Plant Pathology

Diogo N. Silva, P. Talhinhas, A. Vieira, 2017, Front. Plant Sci..

Host‐jump drives rapid and recent ecological speciation of the emergent fungal pathogen Colletotrichum kahawae

Diogo N. Silva, O. Paulo, L. Cai, 2012, Molecular ecology.

Genome-Wide Signatures of Selection in Colletotrichum kahawae Reveal Candidate Genes Potentially Involved in Pathogenicity and Aggressiveness

Diogo N. Silva, O. Paulo, A. Vieira, 2019, Front. Microbiol..

Novel insights on colonization routes and evolutionary potential of Colletotrichum kahawae, a severe pathogen of Coffea arabica.

Diogo N. Silva, O. Paulo, A. Vieira, 2018, Molecular plant pathology.

The coffee leaf rust pathogen Hemileia vastatrix: one and a half centuries around the tropics.

Ana Vieira, Diogo N. Silva, Ana Paula Pereira, 2017, Molecular plant pathology.

Age estimates of Frullania (Frullaniaceae, Porellales) main lineages: another example of rapid and recent diversification in liverwort evolution

Diogo N. Silva, O. Paulo, César A. Garcia, 2017 .

Population genomic footprints of host adaptation, introgression and recombination in coffee leaf rust.

Diogo N. Silva, O. Paulo, D. Batista, 2018, Molecular plant pathology.

Analysis of Population Genetic Diversity and Differentiation in Hemileia vastatrix by Molecular Markers

Diogo N. Silva, O. Paulo, P. Talhinhas, 2011 .

Evolutionary and Biogeographic Insights on the Macaronesian Beta-Patellifolia Species (Amaranthaceae) from a Time-Scaled Molecular Phylogeny

Diogo N. Silva, O. Paulo, A. Santos‐Guerra, 2016, PloS one.

Worldwide population structure of the coffee rust fungus Hemileia vastatrix is strongly shaped by local adaptation and breeding history.

Diogo N. Silva, O. Paulo, D. Batista, 2022, Phytopathology.

Application of the Apn2/MAT locus to improve the systematics of the Colletotrichum gloeosporioides complex: an example from coffee (Coffea spp.) hosts

Diogo N. Silva, O. Paulo, L. Cai, 2012, Mycologia.

chewBBACA: A complete suite for gene-by-gene schema creation and strain identification

Diogo N. Silva, M. Ramirez, J. A. Carriço, 2017, bioRxiv.