Rhonda Bacher

发表

Normalization for Single-Cell RNA-Seq Data Analysis.

Rhonda Bacher, Rhonda L. Bacher, 2019, Methods in molecular biology.

SCnorm: A quantile-regression based approach for robust normalization of single-cell RNA-seq data

Ning Leng, James A. Thomson, Christina Kendziorski, 2016, bioRxiv.

Trendy: segmented regression analysis of expression dynamics in high-throughput ordered profiling experiments

Ning Leng, James A. Thomson, Christina Kendziorski, 2018, BMC Bioinformatics.

Trendy: Segmented regression analysis of expression dynamics for high-throughput ordered profiling experiments

James A. Thomson, Christina Kendziorski, Li-Fang Chu, 2017 .

Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics

Brian E. McIntosh, Christina Kendziorski, Cara Argus, 2019, PLoS Comput. Biol..

Binned multinomial logistic regression for integrative cell type annotation

Rhonda Bacher, Aaron J. Molstad, Keshav Motwani, 2021, 2111.12149.

Methylscaper: an R/Shiny app for joint visualization of DNA methylation and nucleosome occupancy in single-molecule and single-cell data

Alberto Riva, Carolina E. Pardo, Russell P. Darst, 2021, Bioinform..

Species-specific developmental timing is maintained by pluripotent stem cells ex utero.

Brian E. McIntosh, Jennifer M. Bolin, Ron Stewart, 2017, Developmental biology.

Spatial patterns of gene expression are unveiled in the chick primitive streak by ordering single-cell transcriptomes.

James A. Thomson, Li-Fang Chu, Ron Stewart, 2018, Developmental biology.

Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress

Megan N. McClean, Christina Kendziorski, Stephen R Quake, 2017, PLoS biology.