Gary Benson

发表

Discovering Frequent Poly-Regions in DNA Sequences

Panagiotis Papapetrou, Gary Benson, George Kollios, 2006, Sixth IEEE International Conference on Data Mining - Workshops (ICDMW'06).

Longest Common Subsequence in k Length Substrings

Gary Benson, Avivit Levy, B. Riva Shalom, 2013, SISAP.

Tandem Cyclic Alignment

Gary Benson, 2001, CPM.

An SIMD Algorithm for Wraparound Tandem Alignment

Gary Benson, Joshua Loving, John P. Scaduto, 2017, ISBRA.

Two-Dimensional Periodicity in Rectangular Arrays

Gary Benson, Amihood Amir, G. Benson, 1998, SIAM J. Comput..

Editorial: Nucleic Acids Research annual Web Server Issue in 2014

Gary Benson, 2014, Nucleic Acids Res..

Let sleeping files lie: pattern matching in Z-compressed files

Gary Benson, Amihood Amir, Martin Farach-Colton, 1994, SODA '94.

Alphabet independent two dimensional matching

Gary Benson, Amihood Amir, Martin Farach-Colton, 1992, STOC '92.

Evaluating distance functions for clustering tandem repeats.

Gary Benson, Suyog Rao, Alfredo Rodriguez, 2005, Genome informatics. International Conference on Genome Informatics.

Two-dimensional periodicity and its applications

Gary Benson, Amihood Amir, 1992, SODA '92.

All hits all the time: parameter-free calculation of spaced seed sensitivity

Gary Benson, Denise Y. F. Mak, 2009, Bioinform..

Special issue in honor of the 60th birthday of Amihood Amir

Moshe Lewenstein, Gary Benson, Ely Porat, 2016, Theor. Comput. Sci..

Algorithms in bioinformatics / Gary Benson and Roderic Page

Gary Benson, 2004 .

Book Review: Algorithms on strings, trees, and sequences: computer science and computational biology by Dan Gusfield (: Cambridge University Press, Cambridge, England, 1997)

Gary Benson, 1998, SIGA.

Tandem cyclic alignment

Gary Benson, G. Benson, 2005, Discret. Appl. Math..

Optimal Two-Dimensional Compressed Matching

Gary Benson, Amihood Amir, Martin Farach-Colton, 1994, J. Algorithms.

A Space Efficient Algorithm for Finding the Best Nonoverlapping Alignment Score

Gary Benson, 1995, Theor. Comput. Sci..

Efficient two-dimensional compressed matching

Gary Benson, Amihood Amir, A. Amir, 1992, Data Compression Conference, 1992..

Indel seeds for homology search

Gary Benson, Denise Y. F. Mak, Yevgeniy Gelfand, 2006, ISMB.

Mining poly-regions in DNA

Panagiotis Papapetrou, Gary Benson, George Kollios, 2012, Int. J. Data Min. Bioinform..

Exact Distribution of a Spaced Seed Statistic for DNA Homology Detection

Gary Benson, Denise Y. F. Mak, G. Benson, 2008, SPIRE.

Tandem repeats over the edit distance

Gary Benson, Dina Sokol, Justin Tojeira, 2007, Bioinform..

Nucleic Acids Research annual Web Server Issue in 2009

Gary Benson, G. Benson, Gary Benson, 2009, Nucleic Acids Res..

Editorial: Nucleic Acids Research annual Web Server Issue in 2016

Gary Benson, 2016, Nucleic Acids Res..

A Bit-Parallel, General Integer-Scoring Sequence Alignment Algorithm

Gary Benson, Joshua Loving, Yozen Hernandez, 2013, CPM.

LCSk: A refined similarity measure

Gary Benson, Avivit Levy, B. Riva Shalom, 2016, Theor. Comput. Sci..

Reconstructing the Duplication History of a Tandem Repeat

Gary Benson, Lan Dong, G. Benson, 1999, ISMB.

Editorial: Nucleic Acids Research annual Web Server Issue in 2015

Gary Benson, Gary Benson, 2015, Nucleic Acids Res..

An Alphabet Independent Approach to Two-Dimensional Pattern Matching

Gary Benson, Amihood Amir, Martin Farach-Colton, 1994, SIAM J. Comput..

BitPAl: a bit-parallel, general integer-scoring sequence alignment algorithm

Gary Benson, Joshua Loving, Yozen Hernandez, 2014, Bioinform..

Consensus RNA Secondary Structure Prediction by Ranking k-Length Stems

Gary Benson, Denise Y. F. Mak, G. Benson, 2009, BIOCOMP.

Algorithms in Bioinformatics

Gary Benson, Roderic D. M. Page, R. Guigó, 2002, Lecture Notes in Computer Science.

Sequence alignment with tandem duplication

Gary Benson, G. Benson, 1997, RECOMB '97.

Evolutionary History of Mammalian Transposons Determined by Genome-Wide Defragmentation

Gary Benson, Yevgeniy Gelfand, György Abrusán, 2007, PLoS Comput. Biol..

Optimal Two-Dimensional Compressed Matching

Gary Benson, Amihood Amir, Martin Farach-Colton, 1997, J. Algorithms.

A Space Efficient Algorithm for Finding the Best Non-Overlapping Alignment Score

Gary Benson, 1994, CPM.

Optimal parallel two dimensional pattern matching

Gary Benson, Amihood Amir, Martin Farach-Colton, 1993, SPAA '93.

Pattern matching with address errors: rearrangement distances

Steven Skiena, Gary Benson, Yonatan Aumann, 2006, SODA '06.

Composition Alignment

Gary Benson, 2003, WABI.

3'-UTR SIRF: A database for identifying clusters of whort interspersed repeats in 3' untranslated regions

Gary Benson, In Lim, Bianca Heinrich, 2007, BMC Bioinformatics.

Optimal Parallel Two Dimensional Text Searching on a CREW PRAM

Gary Benson, Amihood Amir, Martin Farach-Colton, 1998, Inf. Comput..

On the Distribution of K-tuple Matches for Sequence Homology: A Constant Time Exact Calculation of the Variance

Gary Benson, X. Su, X. Su, 1998, J. Comput. Biol..

Pooling strategies for establishing physical genome maps using FISH

Gary Benson, Fengzhu Sun, Michael S. Waterman, 1997, RECOMB '97.

Sequence Alignment with Tandem Duplication

Gary Benson, 1997, J. Comput. Biol..

Sequence analysis Oligonucleotide fingerprint identification for microarray-based pathogen diagnostic assays

Gary Benson, Jaques Reifman, Nela Zavaljevski, 2006 .

A new distance measure for comparing sequence profiles based on path lengths along an entropy surface

Gary Benson, G. Benson, 2002, ECCB.

Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data

Gary Benson, William Johnson, Keith A. Crandall, 2014, BMC Bioinformatics.

TRDB—The Tandem Repeats Database

Gary Benson, Yevgeniy Gelfand, Alfredo Rodriguez, 2006, Nucleic Acids Res..

An algorithm for finding tandem repeats of unspecified pattern size

Gary Benson, G. Benson, 1998, RECOMB '98.

All Hits All The Time: Parameter Free Calculation of Seed Sensitivity

Gary Benson, Denise Y. F. Mak, 2007, APBC.

Generalized Methods for Discovering Frequent Poly-Regions

Panagiotis Papapetrou, Gary Benson, G. Benson, 2008 .

Pattern matching with address errors: rearrangement distances

Steven Skiena, Gary Benson, Yonatan Aumann, 2006, SODA 2006.

GlycReSoft: A Software Package for Automated Recognition of Glycans from LC/MS Data

Gary Benson, Gordon W. Slysz, Joseph Zaia, 2012, PloS one.

Inverted repeat structure of the human genome: the X-chromosome contains a preponderance of large, highly homologous inverted repeats that contain testes genes.

Gary Benson, Joti Giordano, G. Benson, 2004, Genome research.

Editorial. Nucleic Acids Research annual Web Server Issue in 2010.

Gary Benson, G. Benson, 2010, Nucleic acids research.

Minimal entropy probability paths between genome families

Gary Benson, William Casey, Calvin Ahlbrandt, 2004, Journal of mathematical biology.

VNTRseek—a computational tool to detect tandem repeat variants in high-throughput sequencing data

Gary Benson, Joshua Loving, Yevgeniy Gelfand, 2014, Nucleic acids research.

Two-dimensional periodicity and matching algorithms

Gary Benson, 1992 .

The Truth, the Whole Truth, and Nothing but the Truth: Alphabet Independent Two Dimensional Witness Table Construction

Gary Benson, Amihood Amir, Martin Farach-Colton, 1993 .