Robert A. Edwards

发表

PMAnalyzer: a new web interface for bacterial growth curve analysis

Daniel Cuevas, Robert A. Edwards, Daniel A. Cuevas, 2017, Bioinform..

TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets

Forest Rohwer, Robert A. Edwards, Robert Schmieder, 2010, BMC Bioinformatics.

RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

Fangfang Xia, Rick Stevens, Robert Olson, 2015, Scientific Reports.

PHACTS, a computational approach to classifying the lifestyle of phages

Robert A. Edwards, Barbara A. Bailey, Katelyn McNair, 2012, Bioinform..

Quality control and preprocessing of metagenomic datasets

Robert A. Edwards, Robert Schmieder, R. Edwards, 2011, Bioinform..

An application of statistics to comparative metagenomics

Forest Rohwer, Robert A. Edwards, Beltran Rodriguez-Brito, 2006, BMC Bioinformatics.

Phage Eco-Locator: a web tool for visualization and analysis of phage genomes in metagenomic data sets

Robert A. Edwards, Bhakti Dwivedi, Mya Breitbart, 2011, BMC Bioinformatics.

PhiSiGns: an online tool to identify signature genes in phages and design PCR primers for examining phage diversity

Robert A. Edwards, Bhakti Dwivedi, Robert Schmieder, 2012, BMC Bioinformatics.

SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data

Bas E. Dutilh, Robert A. Edwards, Genivaldo Gueiros Z. Silva, 2015, Bioinform..

Accessing the SEED Genome Databases via Web Services API: Tools for Programmers

Robert Olson, Rick L. Stevens, Daniel Cuevas, 2010, BMC Bioinformatics.

The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation

Fangfang Xia, Daniela Bartels, Tobias Paczian, 2006, Nucleic Acids Res..

Searching the Sequence Read Archive using Jetstream and Wrangler

Eroma Abeysinghe, Mats Rynge, Robert A. Edwards, 2018, PEARC.

multiPhATE: bioinformatics pipeline for functional annotation of phage isolates

Robert A. Edwards, Casandra Philipson, Carol L. Ecale Zhou, 2019, Bioinform..

PhANNs, a fast and accurate tool and web server to classify phage structural proteins

Vito Adrian Cantu, Peter Salamon, Victor Seguritan, 2020, bioRxiv.

Identification and removal of ribosomal RNA sequences from metatranscriptomes

Robert A. Edwards, Robert Schmieder, Yan Wei Lim, 2011, Bioinform..

The GAAS Metagenomic Tool and Its Estimations of Viral and Microbial Average Genome Size in Four Major Biomes

Forest Rohwer, Rick L. Stevens, Robert A. Edwards, 2009, PLoS Comput. Biol..

Finding novel genes in bacterial communities isolated from the environment

Daniela Bartels, Folker Meyer, Jens Stoye, 2006, ISMB.

PARTIE: a partition engine to separate metagenomic and amplicon projects in the Sequence Read Archive

Robert A. Edwards, Pedro J. Torres, Katelyn McNair, 2017, Bioinform..

phylogenetic and functional analysis of metagenomes

Andreas Wilke, Tobias Paczian, Jared Wilkening, 2022 .

Real Time Metagenomics: Using k-mers to annotate metagenomes

Robert Olson, Rick L. Stevens, Robert A. Edwards, 2012, Bioinform..

Deviations from Ultrametricity in Phage Protein Distances

Peter Salamon, Forest Rohwer, Robert A. Edwards, 2009, Open Syst. Inf. Dyn..

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

Fangfang Xia, Robert Olson, James J. Davis, 2013, Nucleic Acids Res..

FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares

Bas E. Dutilh, Robert A. Edwards, Daniel A. Cuevas, 2014, PeerJ.

Combining de novo and reference-guided assembly with scaffold_builder

Bas E. Dutilh, Robert A. Edwards, Robert Schmieder, 2013, Source Code for Biology and Medicine.

Reference-independent comparative metagenomics using cross-assembly: crAss

Peter Salamon, Bas E. Dutilh, Robert A. Edwards, 2012, Bioinform..

Some of the most interesting CASP11 targets through the eyes of their authors

Victor Seguritan, Thomas S. Peat, Forest Rohwer, 2015, Proteins.

Philympics 2021: Prophage Predictions Perplex Programs

Robert A. Edwards, Katelyn McNair, Simon Roux, 2021, F1000Research.

RaFAH: Host prediction for viruses of Bacteria and Archaea based on protein content

Bas E. Dutilh, Robert A. Edwards, Mario López-Pérez, 2021, Patterns.

GenomePeek—an online tool for prokaryotic genome and metagenome analysis

Robert A. Edwards, Katelyn McNair, R. Edwards, 2015, PeerJ.

Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins

Peter Salamon, Forest Rohwer, Robert A. Edwards, 2015, Journal of visualized experiments : JoVE.

Transposases are the most abundant, most ubiquitous genes in nature

Robert A. Edwards, Mya Breitbart, Ramy K. Aziz, 2010, Nucleic acids research.

From DNA to FBA: How to Build Your Own Genome-Scale Metabolic Model

Robert A. Edwards, Ross Overbeek, Janaka N. Edirisinghe, 2016, Frontiers in microbiology.

Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition

Forest Rohwer, Bas E. Dutilh, Robert A. Edwards, 2014, PeerJ.

Erratum: Functional metagenomic profiling of nine biomes

Rick Stevens, David L. Valentine, Forest Rohwer, 2008 .

Applying Shannon's information theory to bacterial and phage genomes and metagenomes

Peter Salamon, Robert A. Edwards, Ramy K. Aziz, 2013, Scientific Reports.

Microbial taxonomy in the post-genomic era: Rebuilding from scratch?

Bas E. Dutilh, Robert A. Edwards, Martin F. Polz, 2014, Archives of Microbiology.

Multivariate Analysis of Functional Metagenomes

Robert A. Edwards, Robert Schmieder, Barbara A. Bailey, 2013, Front. Genet..

Baseline Assessment of Mesophotic Reefs of the Vitória-Trindade Seamount Chain Based on Water Quality, Microbial Diversity, Benthic Cover and Fish Biomass Data

Luiz M. R. Gadelha, Robert A. Edwards, Rodolfo Paranhos, 2015, PloS one.

SEED Servers: High-Performance Access to the SEED Genomes, Annotations, and Metabolic Models

Fangfang Xia, Rick L. Stevens, Robert A. Edwards, 2012, PloS one.

Computational approaches to predict bacteriophage–host relationships

Bas E. Dutilh, Robert A. Edwards, Karoline Faust, 2015, FEMS microbiology reviews.

Bacterial carbon processing by generalist species in the coastal ocean

Robert A. Edwards, Mary Ann Moran, Shulei Sun, 2008, Nature.

Taxonomic and Functional Microbial Signatures of the Endemic Marine Sponge Arenosclera brasiliensis

Bas E. Dutilh, Robert A. Edwards, A. T. Vasconcelos, 2012, PloS one.

Metagenomic and Small-Subunit rRNA Analyses Reveal the Genetic Diversity of Bacteria, Archaea, Fungi, and Viruses in Soil

Peter Salamon, Forest Rohwer, Rob Knight, 2007, Applied and Environmental Microbiology.

Sequencing of Seven Haloarchaeal Genomes Reveals Patterns of Genomic Flux

Marc T. Facciotti, Jonathan A. Eisen, Robert A. Edwards, 2012, PloS one.

Critical Assessment of Metagenome Interpretation – a benchmark of computational metagenomics software

Dominique Lavenier, Alexander Sczyrba, Mihai Pop, 2017, bioRxiv.

PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies

Robert A. Edwards, Ramy K. Aziz, Sajia Akhter, 2012, Nucleic acids research.